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BaseInfo

ncRNA ID	novel_zma_miR4518
Species	Zea mays
Class	miRNA
Genome position	Chr10:36087695-36087832 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287164
Length	24
Mature sequence(if miRNA)	115 - AAGGGCUGAUUUGGUGGAUAGGGA - 138
Stem-loop(if miRNA)	--A                          U            U U     ----A         C      A    AGGGCUGAUUUGGUGGAUAGGGAUCA GAGGGGAUCCAU G GGAGA     AUCCCCUUG UAUUCA U    |||||||||||||||||||||||||| |||||||||||| | |||||     ||||||||| ||||||    UCCUGGCUAAACCACCUAUCCCUAGU CUCCCCUAGGUA C CCUCU     UAGGGGAAC AUAAGU U GAA                          U            - -     CCUUA         A      U
Stem-loop sequence	AAGGGCUGAUUUGGUGGAUAGGGAUCAUGAGGGGAUCCAUUGUGGAGAAAUCCCCUUGCUAUUCAAUUUUGAAUAACAAGGGGAUAUUCCUCUCCCAUGGAUCCCCUCUUGAUCCCUAUCCACCAAAUCGGUCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108273.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |||||||=|||||||||||=|||| targets:455   UCCCUAUUCACCAAAUCAGUCCUU   478 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT038234.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |=|||||||||||||*|||||||| targets:1110   UUCCUAUCCACCAAACCAGCCCUU   1133 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0220G01 mRNA, complete cds	NA	coding protein	psRNATarget
BT038688.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |=|||||||||||||*|||||||| targets:1235   UUCCUAUCCACCAAACCAGCCCUU   1258 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0309H03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146901.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |=|||||||||||||*|||||||| targets:1235   UUCCUAUCCACCAAACCAGCCCUU   1258 Target Full Sequence	1.5	Zea mays UMP-CMP kinase 3 (LOC100272426), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   ||||||*||||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   ||||||*||||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |||||=*=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |||||=*=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |||||=*=|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
EU942647.1	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   |=|*|=|||||||||*|||||||| targets:534   UUCAUGUCCACCAAACCAGCCCUU   557 Target Full Sequence	2.5	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget
XM_008663725.2	ncRNA:24   AGGGAUAGGUGGUUUAGUCGGGAA   1   ||***||=|||||||||||||||* targets:154   UCAGAAUUCACCAAAUCAGCCCUC   177 Target Full Sequence	2.0	PREDICTED: Zea mays scramblase family protein (LOC100282688), transcript variant X1, mRNA	NA	coding protein	psRNATarget