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BaseInfo

ncRNA ID	novel_zma_miR4515
Species	Zea mays
Class	miRNA
Genome position	Chr2:14852916-14852976 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR1997865;SRR5451003;SRR1997866;SRR5451005;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - GUUCGGUUAGGGGUGGAUUGAUGG - 24
Stem-loop(if miRNA)	--U                          C    UCAAUCCACCCCUAAUCGAACAAGUU U    |||||||||||||||||||||||||| A    AGUUAGGUGGGGAUUGGCUUGUUCAG A GGU                          A
Stem-loop sequence	UUCAAUCCACCCCUAAUCGAACAAGUUCUAAAGACUUGUUCGGUUAGGGGUGGAUUGAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ||*||||||||||||||||||||| targets:3286   CCCUCAAUCCACCCCUAACCGAAC   3309 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   |=*||||||||||||||||||||| targets:3054   CUCUCAAUCCACCCCUAACCGAAC   3077 Target Full Sequence	0.0	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   |=*||||||||||||||||||||| targets:3059   CUCUCAAUCCACCCCUAACCGAAC   3082 Target Full Sequence	0.0	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ||-||||||||||||||||||||= targets:226   CC-UCAAUCCACCCCUAACCGAAU   248 Target Full Sequence	1.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   |=*||||||||||=|||||||||| targets:152   CUCUCAAUCCACCUCUAACCGAAC   175 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
BT083705.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   =|||=|||||||||*||||||||| targets:1858   UCAUUAAUCCACCCAUAACCGAAC   1881 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0030D06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350330.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   =|||=|||||||||*||||||||| targets:5666   UCAUUAAUCCACCCAUAACCGAAC   5689 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191405 (LOC100191405), mRNA	NA	coding protein	psRNATarget
EU961775.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ||*||||||||||||||*|||||| targets:1114   CCCUCAAUCCACCCCUAUCCGAAC   1137 Target Full Sequence	1.5	Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155558.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ||*||||||||||||||*|||||| targets:1114   CCCUCAAUCCACCCCUAUCCGAAC   1137 Target Full Sequence	1.5	Zea mays 6b-interacting protein 1 (LOC100282650), mRNA	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   =|*|||||||||*||||||||||| targets:206   UCUUCAAUCCACACCUAACCGAAC   229 Target Full Sequence	1.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   =|*|||||||||*||||||||||| targets:196   UCUUCAAUCCACACCUAACCGAAC   219 Target Full Sequence	1.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ||*||*|||||=|||||||||||| targets:1233   CCCUCCAUCCAUCCCUAACCGAAC   1256 Target Full Sequence	2.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   GGU-------AGUUAGGUGGGGAUUGGCUUG   1   |||-------|||||||||*||||||||||| targets:129   CCAAUACUUUUCAAUCCACACCUAACCGAAC   159 Target Full Sequence	1.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   GGU-------AGUUAGGUGGGGAUUGGCUUG   1   |||-------|||||||||*||||||||||| targets:414   CCAAUACUUUUCAAUCCACGCCUAACCGAAC   444 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   GGU-------AGUUAGGUGGGGAUUGGCUUG   1   |||-------|||||||||*||||||||||| targets:774   CCAAUACUUUUCAAUCCACGCCUAACCGAAC   804 Target Full Sequence	1.5	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
BT069484.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ==*|||||||||||||||=||||* targets:1177   UUCUCAAUCCACCCCUAAUCGAAG   1200 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0143K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT018770.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ==*|||||||||||||||=||||* targets:1314   UUCUCAAUCCACCCCUAAUCGAAG   1337 Target Full Sequence	2.5	Zea mays clone EL01N0525C10.d mRNA sequence	NA	coding protein	psRNATarget
NM_001156604.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ==*|||||||||||||||=||||* targets:1366   UUCUCAAUCCACCCCUAAUCGAAG   1389 Target Full Sequence	2.5	Zea mays calcineurin B-like2 (si496006g11), mRNA	NA	coding protein	psRNATarget
EU965598.1	ncRNA:24   GGUAGUUAGGUGGGGAUUGGCUUG   1   ==*|||||||||||||||=||||* targets:1366   UUCUCAAUCCACCCCUAAUCGAAG   1389 Target Full Sequence	2.5	Zea mays clone 287294 calcineurin B-like protein 4 mRNA, complete cds	NA	coding protein	psRNATarget