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BaseInfo

ncRNA ID novel_zma_miR4512
Species Zea mays
Class miRNA
Genome position Chr2:62530532-62530625 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 71 - CCCAUGUGGAUUGGAUGAGAUUGA - 94
Stem-loop(if miRNA) --C             A  A       -AA    UCUAAAAGAUUUU
   CCAUGUGGAUUGG UG GAUUGAA   AAAA             G
   ||||||||||||| || |||||||   ||||             A
   GGUACACCUAACC AC CUAACUU   CAAA             C
UUA             C  C       ACU    UUUAUUUUUUGUU
Stem-loop sequence CCCAUGUGGAUUGGAUGAGAUUGAAAAAAAAUCUAAAAGAUUUUGACUUGUUUUUUAUUUAAACUCAUUCAAUCCCACCCAAUCCACAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241774.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||||||||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGGG   121

0.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
JB170105.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||||||||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGGG   121

0.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
HI409644.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||||||||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGGG   121

0.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-||||||||||||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGGG   1310

0.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
EU973712.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-||||||||||||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGGG   1310

0.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
BT083591.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-||||||||||||||||||||||
targets:1182   UCUAAUCUCAUCCAAUCCACAUGGG   1206

0.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-||||||||||||||||||||||
targets:180   UCUAAUCUCAUCCAAUCCACAUGGG   204

0.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||*|||||||||||||||||*
targets:108   UCAAUAUCAUCCAAUCCACAUGGC   131

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
HI407028.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||||||||=||||||||
targets:74   CCAAUCUCAUCCAAUUCACAUGGG   97

1.5 Sequence 5153 from Patent EP2074227 NA coding protein psRNATarget
JB167489.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||||||||=||||||||
targets:74   CCAAUCUCAUCCAAUUCACAUGGG   97

1.5 Sequence 5153 from Patent EP2559767 NA coding protein psRNATarget
LQ239158.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||||||||=||||||||
targets:74   CCAAUCUCAUCCAAUUCACAUGGG   97

1.5 Sequence 5153 from Patent EP2985353 NA coding protein psRNATarget
NM_001326531.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=|||=|||||=||||||||||||
targets:1434   UUAAUUUCAUCUAAUCCACAUGGG   1457

2.5 Zea mays D-glycerate 3-kinase, chloroplastic-like (LOC103651345), mRNA NA coding protein psRNATarget
EU948773.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=|||=|||||=||||||||||||
targets:1203   UUAAUUUCAUCUAAUCCACAUGGG   1226

2.5 Zea mays clone 384607 mRNA sequence NA coding protein psRNATarget
EU958201.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=|||=|||||=||||||||||||
targets:973   UUAAUUUCAUCUAAUCCACAUGGG   996

2.5 Zea mays clone 1678209 mRNA sequence NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||||
targets:280   CCAAUCCCAUCCAAUCCACAUGGG   303

1.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||||
targets:1291   CCAAUCCCAUCCAAUCCACAUGGG   1314

1.0 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
EU974368.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||*|||||||||||||||||*
targets:1247   UCAAUAUCAUCCAAUCCACAUGGU   1270

2.0 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI406655.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||*|||||||||||||||||*
targets:145   UCAAUAUCAUCCAAUCCACAUGGA   168

2.0 Sequence 4780 from Patent EP2074227 NA coding protein psRNATarget
JB167116.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||*|||||||||||||||||*
targets:145   UCAAUAUCAUCCAAUCCACAUGGA   168

2.0 Sequence 4780 from Patent EP2559767 NA coding protein psRNATarget
LQ238785.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||*|||||||||||||||||*
targets:145   UCAAUAUCAUCCAAUCCACAUGGA   168

2.0 Sequence 4780 from Patent EP2985353 NA coding protein psRNATarget
JB170575.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGGG   100

1.0 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
LQ242244.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGGG   100

1.0 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
HI410114.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGGG   100

1.0 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
AY104584.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||||*||||||||||||
targets:1124   UCUAAUCUCAUCAAAUCCACAUGGG   1148

1.5 Zea mays PCO129366 mRNA sequence NA coding protein psRNATarget
NM_001148796.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||||*||||||||||||
targets:1088   UCUAAUCUCAUCAAAUCCACAUGGG   1112

1.5 Zea mays uncharacterized LOC100274437 (pco129366(222)), mRNA NA coding protein psRNATarget
BT043046.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||||*||||||||||||
targets:1088   UCUAAUCUCAUCAAAUCCACAUGGG   1112

1.5 Zea mays full-length cDNA clone ZM_BFc0087D17 mRNA, complete cds NA coding protein psRNATarget
XM_020552473.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||=||||
targets:2984   ACAAUCUCACCCAAUCCACGUGGG   3007

2.5 PREDICTED: Zea mays exocyst complex component SEC3A-like (LOC103652873), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552475.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||=||||
targets:2701   ACAAUCUCACCCAAUCCACGUGGG   2724

2.5 PREDICTED: Zea mays exocyst complex component SEC3A-like (LOC103652873), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||||||*=||||||||||||*
targets:1446   UCAAUCUCACUCAAUCCACAUGGA   1469

3.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||||||*=||||||||||||*
targets:1446   UCAAUCUCACUCAAUCCACAUGGA   1469

3.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
HI403302.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*||||||||||||=||||
targets:87   CCAAUCCCAUCCAAUCCACGUGGG   110

2.5 Sequence 1427 from Patent EP2074227 NA coding protein psRNATarget
JB163763.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*||||||||||||=||||
targets:87   CCAAUCCCAUCCAAUCCACGUGGG   110

2.5 Sequence 1427 from Patent EP2559767 NA coding protein psRNATarget
LQ235432.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*||||||||||||=||||
targets:87   CCAAUCCCAUCCAAUCCACGUGGG   110

2.5 Sequence 1427 from Patent EP2985353 NA coding protein psRNATarget
EZ077834.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*||||||||||||||||||*
targets:49   UUAAACUCAUCCAAUCCACAUGGA   72

1.0 TSA: Zea mays contig13473, mRNA sequence NA coding protein psRNATarget
EU957741.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1402   CCAAUCUCACCCAAUCCACAUGGA   1425

2.0 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
EU957033.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1401   CCAAUCUCACCCAAUCCACAUGGA   1424

2.0 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1219   CCAAUCUCACCCAAUCCACAUGGA   1242

2.0 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1219   CCAAUCUCACCCAAUCCACAUGGA   1242

2.0 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1057   CCAAUCUCACCCAAUCCACAUGGA   1080

2.0 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*|||||||||||||*
targets:1024   CCAAUCUCACCCAAUCCACAUGGA   1047

2.0 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
EU945995.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*||||||||||||||||*
targets:556   CCAAUCCCAUCCAAUCCACAUGGA   579

2.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
EZ081225.1
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||*|=||||||||||||
targets:52   UCUAAUCUCACCUAAUCCACAUGGG   76

2.5 TSA: Zea mays contig16865, mRNA sequence NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2351   CCAAUCUCACUCAAUCCACAUGGA   2374

3.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2291   CCAAUCUCACUCAAUCCACAUGGA   2314

3.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2284   CCAAUCUCACUCAAUCCACAUGGA   2307

3.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2156   CCAAUCUCACUCAAUCCACAUGGA   2179

3.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2155   CCAAUCUCACUCAAUCCACAUGGA   2178

3.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:2083   CCAAUCUCACUCAAUCCACAUGGA   2106

3.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:249   CCAAUCUCACUCAAUCCACAUGGA   272

3.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:458   CCAAUCUCACUCAAUCCACAUGGA   481

3.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:94   CCAAUCUCACUCAAUCCACAUGGA   117

3.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:94   CCAAUCUCACUCAAUCCACAUGGA   117

3.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:94   CCAAUCUCACUCAAUCCACAUGGA   117

3.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:90   CCAAUCUCACUCAAUCCACAUGGA   113

3.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:90   CCAAUCUCACUCAAUCCACAUGGA   113

3.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:90   CCAAUCUCACUCAAUCCACAUGGA   113

3.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:82   CCAAUCUCACUCAAUCCACAUGGA   105

3.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:82   CCAAUCUCACUCAAUCCACAUGGA   105

3.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:82   CCAAUCUCACUCAAUCCACAUGGA   105

3.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *||||||||*=||||||||||||*
targets:19   CCAAUCUCACUCAAUCCACAUGGA   42

3.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  *|||||*|||||||||||||||*|
targets:2500   CCAAUCCCAUCCAAUCCACAUGAG   2523

2.5 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551219.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |||||**||||||||||||||||*
targets:292   UCAAUACCAUCCAAUCCACAUGGA   315

3.0 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||*=||||||||||||*
targets:3440   UCUAAUCUCACUCAAUCCACAUGGA   3464

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||*=||||||||||||*
targets:3409   UCUAAUCUCACUCAAUCCACAUGGA   3433

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AG-UUAGAGUAGGUUAGGUGUACCC   1
  ||-|||||||*=||||||||||||*
targets:3396   UCUAAUCUCACUCAAUCCACAUGGA   3420

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001350089.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*|*||||||||||||||||*
targets:5898   UUAAACCCAUCCAAUCCACAUGGA   5921

2.0 Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA NA coding protein psRNATarget
XM_020538632.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*|*||||||||||||||||*
targets:4836   UUAAACCCAUCCAAUCCACAUGGA   4859

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538631.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*|*||||||||||||||||*
targets:4835   UUAAACCCAUCCAAUCCACAUGGA   4858

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538630.1
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*|*||||||||||||||||*
targets:4087   UUAAACCCAUCCAAUCCACAUGGA   4110

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647808.2
ncRNA:24   AGUUAGAGUAGGUUAGGUGUACCC   1
  |=||*|*||||||||||||||||*
targets:4048   UUAAACCCAUCCAAUCCACAUGGA   4071

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA NA coding protein psRNATarget