Search result

BaseInfo

ncRNA ID	novel_zma_miR4511
Species	Zea mays
Class	miRNA
Genome position	Chr2:33697769-33697852 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	23
Mature sequence(if miRNA)	1 - CAGAGGGGGAUUGGAGGGGAUUA - 23
Stem-loop(if miRNA)	--                   A          U A      A   CAGAGGGGGAUUGGAGGGG UUAAAUCCCC C UAGUCA A   ||||||||||||||||||| |||||||||| | ||||||   GUCUCCCCCUAACUUCCCC AAUUUAGGGG G AUCAGU A AG                   A          U G      A
Stem-loop sequence	CAGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCAUAGUCAAAAAUGACUAGGUGGGGAUUUAAACCCCUUCAAUCCCCCUCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540164.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||*||||||||||||||||||| targets:1601   UAAACCCCUCCAAUCCCCCUCUG   1623 Target Full Sequence	0.0	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||||||||||||||||||||** targets:3270   UAAUCCCCUCCAAUCCCCCUCAA   3292 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||||||||||||||||||||** targets:1591   UAAUCCCCUCCAAUCCCCCUCAA   1613 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||||||||||||||||||||** targets:1591   UAAUCCCCUCCAAUCCCCCUCAA   1613 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:20   AGGGGAGGUUAGGGGGAGAC   1   ||||||=||||||||=|||| targets:1   UCCCCUUCAAUCCCCUUCUG   20 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
AY105398.2	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |**|||||||||=|||||||||* targets:82   UCCUCCCCUCCAGUCCCCCUCUC   104 Target Full Sequence	2.5	Zea mays PCO097656 mRNA sequence	NA	coding protein	psRNATarget
BT055669.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |**|||||||||=|||||||||* targets:23   UCCUCCCCUCCAGUCCCCCUCUC   45 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0098C21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153086.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |**|||||||||=|||||||||* targets:23   UCCUCCCCUCCAGUCCCCCUCUC   45 Target Full Sequence	2.5	Zea mays Protein XRI1 (pco097656b), mRNA	NA	coding protein	psRNATarget
EU961217.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |**|||||||||=|||||||||* targets:95   UCCUCCCCUCCAGUCCCCCUCUC   117 Target Full Sequence	2.5	Zea mays clone 233564 mRNA sequence	NA	coding protein	psRNATarget
XM_008674528.2	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   |**|||||||||=|||||||||* targets:109   UCCUCCCCUCCAGUCCCCCUCUC   131 Target Full Sequence	2.5	PREDICTED: Zea mays Protein XRI1 (pco097656b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551510.1	ncRNA:23   AUUAGGGGAGGUUAGGGGGAGAC   1   *||*|||||||||||||||||** targets:1565   GAAACCCCUCCAAUCCCCCUCAA   1587 Target Full Sequence	2.5	PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA	NA	coding protein	psRNATarget