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BaseInfo

ncRNA ID	novel_zma_miR4506
Species	Zea mays
Class	miRNA
Genome position	Chr2:29297730-29297813 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287163;SRR2287164;SRR2287165;SRR4237223
Length	21
Mature sequence(if miRNA)	1 - UUGGAGGGGAUUGAAGGGGAU - 21
Stem-loop(if miRNA)	--             A            C     C  U   A   UUGGAGGGGAUUG AGGGGAUUAAAU UCUUU UA UCA U   ||||||||||||| |||||||||||| ||||| || |||   AACUUCCCCUAAU UCUCCUAAUUUA AGAAG AU AGU U CU             C            A     U  C   U
Stem-loop sequence	UUGGAGGGGAUUGAAGGGGAUUAAAUCUCUUUCUAUUCAAUUUUGACUAUGAAGAAAUUUAAUCCUCUCUAAUCCCCUUCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163954.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||||*|||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||||*|||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||||*|||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *||||||||||||||||=||| targets:231   UUCCCCUUCAAUCCCCUUCAA   251 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||||||||||||*|||||| targets:3910   AUCCCCUUCAAUCCACUCCAA   3930 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947292.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||=||||||||=||||||| targets:373   CUCCUCUUCAAUCUCCUCCAA   393 Target Full Sequence	2.5	Zea mays clone 337490 mRNA sequence	NA	coding protein	psRNATarget
XM_020544537.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||=||||||||=||||||| targets:668   UUCCUCUUCAAUCUCCUCCAA   688 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103644203 (LOC103644203), mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||||*||||||||||||=| targets:3174   AUCCCCCUCAAUCCCCUCCGA   3194 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||=|=|*|||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	3.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||=|=|*|||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	3.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||=|=|*|||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	3.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*|||||||||||||||||== targets:1114   AGCCCCUUCAAUCCCCUCCGG   1134 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:87   AGCCCCUUCAAUCCUCUCCAU   107 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||*||||||||=||||||| targets:592   CUCCACUUCAAUCUCCUCCAA   612 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget
BT068645.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||*||||||||=||||||| targets:592   CUCCACUUCAAUCUCCUCCAA   612 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:1040   AGCCCCUUCAAUCCUCUCCAU   1060 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:873   AGCCCCUUCAAUCCUCUCCAU   893 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   |*||||||||||||=|||||* targets:873   AGCCCCUUCAAUCCUCUCCAU   893 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||||*|||||||||||=|| targets:1797   UUCCCCCUCAAUCCCCUCUAA   1817 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *|||||*||||||||||||=| targets:2149   UUCCCCCUCAAUCCCCUCCGA   2169 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ104544.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   *||=||*|||||||||||||= targets:82   UUCUCCGUCAAUCCCCUCCAG   102 Target Full Sequence	3.0	TSA: Zea mays contig40201, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:438   AUCCAUAUCAAUCCCCUCCAA   458 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:891   AUCCAUAUCAAUCCCCUCCAA   911 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:839   AUCCAUAUCAAUCCCCUCCAA   859 Target Full Sequence	3.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:837   AUCCAUAUCAAUCCCCUCCAA   857 Target Full Sequence	3.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:838   AUCCAUAUCAAUCCCCUCCAA   858 Target Full Sequence	3.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:910   AUCCAUAUCAAUCCCCUCCAA   930 Target Full Sequence	3.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:15   AUCCGUAUCAAUCCCCUCCAA   35 Target Full Sequence	3.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:1973   AUCCGUAUCAAUCCCCUCCAA   1993 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:21   UAGGGGAAGUUAGGGGAGGUU   1   ||||*=*|||||||||||||| targets:1973   AUCCGUAUCAAUCCCCUCCAA   1993 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget