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BaseInfo

ncRNA ID	novel_zma_miR4494
Species	Zea mays
Class	miRNA
Genome position	Chr1:63122240-63122327 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - ACCGGAGGGGAUUGAAGGGGCUAA - 24
Stem-loop(if miRNA)	--ACC           A    -      A            AUAA      GGAGGGGAUUG AGGG GCUAAA UCCCCUCCUUAU    U      ||||||||||| |||| |||||| ||||||||||||      CCUCCCCUAAC UCCC CGAUUU AGGGGAGGAAUA    U UAUGA           C    U      -            AGUU
Stem-loop sequence	ACCGGAGGGGAUUGAAGGGGCUAAAAUCCCCUCCUUAUAUAAUUUUGAAUAAGGAGGGGAUUUAGCUCCCUCCAAUCCCCUCCAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||||||||||||||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCCGGU   1135 Target Full Sequence	0.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||||||||*|||||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCCGGU   3522 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||||||||*|||||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCCGGU   3557 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||| targets:1030   UUAACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   ||||||||*||||||||||||*|| targets:7   UUAGCCCCCUCAAUCCCCUCCAGU   30 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   AAUC-------GGGGAAGUUAGGGGAGGCCA   1   ||||-------||||*||||||||||||||| targets:75   UUAGUUCAUUUCCCCCUCAAUCCCCUCCGGU   105 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||* targets:683   UUAUCCCCUCCAAUCCCCUCCGGG   706 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||* targets:1563   UUAUCCCCUCCAAUCCCCUCCGGG   1586 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||* targets:1583   UUAUCCCCUCCAAUCCCCUCCGGG   1606 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||* targets:1607   UUAUCCCCUCCAAUCCCCUCCGGG   1630 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AAUCGGGGAAGUUAGGGGAGGCCA   1   |||*|||||*|||||||||||||* targets:1640   UUAUCCCCUCCAAUCCCCUCCGGG   1663 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   AA-UCGGGGAAGUUAGGGGAGGCCA   1   ||-|*||||*|||||||||||||*| targets:3171   UUGAUCCCCCUCAAUCCCCUCCGAU   3195 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget