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BaseInfo

ncRNA ID	novel_zma_miR4490
Species	Zea mays
Class	miRNA
Genome position	Chr10:140834567-140834650 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR5451003;SRR5451004;SRR5451005
Length	24
Mature sequence(if miRNA)	61 - GUGGAUUGGAUGAUAUUGAGUCGG - 84
Stem-loop(if miRNA)	--          -  A    -    C    U    UCAUAGUA   GUGGAUUGGA UG UAUU GAGU GGUU AAAU        A   |||||||||| || |||| |||| |||| ||||        G   CACCUAACCU AC AUAA CUUA CUAA UUUA        U UA          U  -    U    C    C    CCUAAAAC
Stem-loop sequence	GUGGAUUGGAUGAUAUUGAGUCGGUUUAAAUUCAUAGUAAGUCAAAAUCCAUUUCAAUCCAUUCUAAUACAUUCCAAUCCACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041309.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   |||||||||||||||||||||||| targets:103   CCGACUCAAUAUCAUCCAAUCCAC   126 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   GGCUGAG-UUAUAGUAGGUUAGGUG   1   ==**=||-|||*||||||||||||| targets:175   UUUUUUCUAAUCUCAUCCAAUCCAC   199 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   *||||||||||||||||||||||= targets:6356   ACGACUCAAUAUCAUCCAAUCCAU   6379 Target Full Sequence	1.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   *||||||||||||||||||||||= targets:5941   ACGACUCAAUAUCAUCCAAUCCAU   5964 Target Full Sequence	1.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   *||||||||||||||||||||||= targets:5879   ACGACUCAAUAUCAUCCAAUCCAU   5902 Target Full Sequence	1.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551219.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   |||||||||||*|||||||||||| targets:287   CCGACUCAAUACCAUCCAAUCCAC   310 Target Full Sequence	1.5	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   |**||||||||||||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	0.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   |**||||||||||||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	0.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   |**||||||||||||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	0.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
EU974368.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ==**=||||||||||||||||||| targets:1242   UUUUUUCAAUAUCAUCCAAUCCAC   1265 Target Full Sequence	0.0	Zea mays clone 447232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553333.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3305   CC--CUCAGUGUCAUCCAAUCCAC   3326 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553334.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3198   CC--CUCAGUGUCAUCCAAUCCAC   3219 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553335.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3175   CC--CUCAGUGUCAUCCAAUCCAC   3196 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553337.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3104   CC--CUCAGUGUCAUCCAAUCCAC   3125 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020553336.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3074   CC--CUCAGUGUCAUCCAAUCCAC   3095 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001154571.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3084   CC--CUCAGUGUCAUCCAAUCCAC   3105 Target Full Sequence	2.0	Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), mRNA	NA	coding protein	psRNATarget
EU957452.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3084   CC--CUCAGUGUCAUCCAAUCCAC   3105 Target Full Sequence	2.0	Zea mays clone 1592773 phosphatidylinositol-4-phosphate 5-kinase 9 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553340.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3024   CC--CUCAGUGUCAUCCAAUCCAC   3045 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_008645409.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3023   CC--CUCAGUGUCAUCCAAUCCAC   3044 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008645410.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:3000   CC--CUCAGUGUCAUCCAAUCCAC   3021 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645412.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:2996   CC--CUCAGUGUCAUCCAAUCCAC   3017 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008645414.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:2982   CC--CUCAGUGUCAUCCAAUCCAC   3003 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008645415.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||--||||=|=||||||||||||| targets:2933   CC--CUCAGUGUCAUCCAAUCCAC   2954 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol-4-phosphate 5-kinase 9 (cl27615_1), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008654101.2	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ==**=||||||||||=|||||||= targets:2184   UUUUUUCAAUAUCAUUCAAUCCAU   2207 Target Full Sequence	2.5	PREDICTED: Zea mays UPF0496 protein 1 (LOC103632282), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ084135.1	ncRNA:24   GGCUGAGUUAUAGUAGGUUAGGUG   1   ||*||*||||*||||||||||||= targets:27   CCCACACAAUCUCAUCCAAUCCAU   50 Target Full Sequence	3.0	TSA: Zea mays contig19779, mRNA sequence	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   GGCU-------GAGUUAUAGUAGGUUAGGUG   1   ||||-------||||||**|||||||||||| targets:1436   CCGAACAAGCCCUCAAUCCCAUCCAAUCCAC   1466 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget