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BaseInfo

ncRNA ID osa-miRf10046-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UGAUACCUGAUAGGUAUCAC - NA
Stem-loop(if miRNA)       C          G                    GCUG    CGCAUGAUUCCUGAUAGUUAU
GUAUCG GUGAUACCUG UAGGUAUCGCGUGAUACCUG    GUAU                     C
|||||| |||||||||| ||||||||||||||||||||    ||||
CAUAGC CACUAUGGAU GUCCAUAGUGCGCUAUGGAU    AUCU                     A
      C          A                    ---A    ACUAUGAAGAUUACAUAGUCC
Stem-loop sequence GUAUCGCGUGAUACCUGGUAGGUAUCGCGUGAUACCUGGCUGGUAUCGCAUGAUUCCUGAUAGUUAUCACCUGAUACAUUAGAAGUAUCAUCUAAUAGGUAUCGCGUGAUACCUGAUAGGUAUCACCCGAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403788.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  ||||||||||||||||||||
targets:36   GUGAUACCUAUCAGGUAUCA   55

0.0 Sequence 1913 from Patent EP2074227 NA coding protein psRNATarget
JB164249.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  ||||||||||||||||||||
targets:36   GUGAUACCUAUCAGGUAUCA   55

0.0 Sequence 1913 from Patent EP2559767 NA coding protein psRNATarget
LQ235918.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  ||||||||||||||||||||
targets:36   GUGAUACCUAUCAGGUAUCA   55

0.0 Sequence 1913 from Patent EP2985353 NA coding protein psRNATarget
JB164190.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  |||=|||=||||||||||||
targets:44   GUGGUACUUAUCAGGUAUCA   63

2.5 Sequence 1854 from Patent EP2559767 NA coding protein psRNATarget
HI403729.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  |||=|||=||||||||||||
targets:44   GUGGUACUUAUCAGGUAUCA   63

2.5 Sequence 1854 from Patent EP2074227 NA coding protein psRNATarget
LQ235859.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  |||=|||=||||||||||||
targets:44   GUGGUACUUAUCAGGUAUCA   63

2.5 Sequence 1854 from Patent EP2985353 NA coding protein psRNATarget
XM_015770784.1
ncRNA:20   CACUAUGGAUAGUCCAUAGU   1
  *|||||=|||||||||||||
targets:2073   AUGAUAUCUAUCAGGUAUCA   2092

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4328061), mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4328061) coding protein psRNATarget