Search result

BaseInfo

ncRNA ID	novel_zma_miR4485
Species	Zea mays
Class	miRNA
Genome position	Chr10:86416957-86417080 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287162;SRR2287163
Length	24
Mature sequence(if miRNA)	101 - AGGGUCUGUUUGGUUUAUGGCUAA - 124
Stem-loop(if miRNA)	--A               -A  G    CUA       ---C    --C           CA        GGGUCUGUUUGGUUU  UG CUAA   UGCCACA    UUUG   CUAAGGUUAGU  UUUGA    |||||||||||||||  || ||||   |||||||    ||||   |||||||||||  ||||A    CCCGGAUAAACCAAG  AC GAUU   ACGGUGU    AAAC   GAUUCCAAUCA  AAAUU AUA               CG  G    -AA       AAAA    ACU           AG
Stem-loop sequence	AGGGUCUGUUUGGUUUAUGGCUAACUAUGCCACACUUUGCCUAAGGUUAGUCAUUUGAAUUAAAGAACUAACCUUAGUCACAAAAAAAUGUGGCAAAUUAGGCAGCGAACCAAAUAGGCCCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541969.1	ncRNA:24   AAUCGGUA-UUUGGUUUGUCUGGGA   1   ||||=|||-|||||||||||||||| targets:1256   UUAGUCAUCAAACCAAACAGACCCU   1280 Target Full Sequence	2.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   AAUCGGUA-UUUGGUUUGUCUGGGA   1   ||||=|||-|||||||||||||||| targets:1778   UUAGUCAUCAAACCAAACAGACCCU   1802 Target Full Sequence	2.0	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||||||*|||||||||||=|||| targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||||||*|||||||||||=|||| targets:995   UUAGCCACAAACCAAACAGGCCCU   1018 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||||||*=||||||||||||||| targets:729   UUAGCCACGAACCAAACAGACCCU   752 Target Full Sequence	2.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||||||*=||||||||||||||| targets:694   UUAGCCACGAACCAAACAGACCCU   717 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||||||*=||||||||||||||| targets:711   UUAGCCACGAACCAAACAGACCCU   734 Target Full Sequence	2.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||*|||*|||||||||||=|||| targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAUCGGUAUUUGGUUUGUCUGGGA   1   |||*|||*|||||||||||=|||| targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget