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BaseInfo

ncRNA ID	novel_zma_miR4472
Species	Zea mays
Class	miRNA
Genome position	Chr1:297473368-297473501 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - AGAGACGUUAGAUUUGAGAUGGAU - 24
Stem-loop(if miRNA)	--                  AUAUAGUUAUUUUGUAUA    ---   AG ACACCCUCCGACGUCGUGGGCUGUAG   UCAUUUUAGAUCUAACGU                  UUUA   CUA  U                          U   ||||||||||||||||||                  ||||   |||  |   GGUAGAGUUUAGAUUGCA                  ACAA   AGU  A                          G UA                  ---------------GAG    ACU   -- ACAUUAAAUAUUUAUUGUGGAAAGUG
Stem-loop sequence	UCAUUUUAGAUCUAACGUAUAUAGUUAUUUUGUAUAUUUACUAAGUACACCCUCCGACGUCGUGGGCUGUAGUGGUGAAAGGUGUUAUUUAUAAAUUACAAUGAUCAAACAGAGACGUUAGAUUUGAGAUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235327.1	ncRNA:24   UAG---GUAGAGUUUAGAUUGCAGAGA   1   |||---=||=|=||||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget
JB163658.1	ncRNA:24   UAG---GUAGAGUUUAGAUUGCAGAGA   1   |||---=||=|=||||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
HI403197.1	ncRNA:24   UAG---GUAGAGUUUAGAUUGCAGAGA   1   |||---=||=|=||||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	3.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*=|||=|=|=||||||||||||| targets:342   ACUCAUUUUAGAUCUAACGUCUCU   365 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   UAGGUAGAGUUUAGAUUGCAGAGA   1   |*==||||=|=||||||||||||| targets:680   ACUUAUCUUAGAUCUAACGUCUCU   703 Target Full Sequence	2.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget