Search result

BaseInfo

ncRNA ID	novel_zma_miR4469
Species	Zea mays
Class	miRNA
Genome position	Chr1:24773395-24773563 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	21
Mature sequence(if miRNA)	149 - UCAAACUUGAGAUCCUUUGAC - 169
Stem-loop(if miRNA)	--    A               UA  -----ACU         AUU   AAUAUUUA  ACAUCAAAUAGGUAUGCUAUGAAAAUAUAAUU   CAAA GAUCUUAAGUUUGAC  AA        AUAGAGCAA   ACA        UG                                A   |||| |||||||||||||||  ||        |||||||||   |||        ||   GUUU CUAGAGUUCAAACUG  UU        UAUUUUGUU   UGU        UA                                A CA    C               GC  AAAUACAU         -AU   -------A  UACGAUGUCUUAUUCAUAGUAAUAUAAGAAGU
Stem-loop sequence	CAAAAGAUCUUAAGUUUGACUAAAACUAUAGAGCAAAUUACAAAUAUUUAUGACAUCAAAUAGGUAUGCUAUGAAAAUAUAAUUAAUGAAGAAUAUAAUGAUACUUAUUCUGUAGCAUAUAUGUUAUUGUUUUAUUACAUAAAUUCGGUCAAACUUGAGAUCCUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972903.1	ncRNA:21   CAGUUUCCUAGAGUUCAAACU   1   ||||||||||||||||||||| targets:1813   GUCAAAGGAUCUCAAGUUUGA   1833 Target Full Sequence	0.0	Zea mays clone 389868 mRNA sequence	NA	coding protein	psRNATarget
XM_020545186.1	ncRNA:21   CAGUUUCCUAGAGUUCAAACU   1   ||||||**||||||||||||| targets:325   GUCAAAUCAUCUCAAGUUUGA   345 Target Full Sequence	2.0	PREDICTED: Zea mays IQ domain-containing protein IQM5 (LOC103631766), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008671468.2	ncRNA:21   CAGUUUCCUAGAGUUCAAACU   1   ||||||**||||||||||||| targets:325   GUCAAAUCAUCUCAAGUUUGA   345 Target Full Sequence	2.0	PREDICTED: Zea mays IQ domain-containing protein IQM5 (LOC103631766), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001177272.1	ncRNA:21   CAGUUUCCUAGAGUUCAAACU   1   |*|==|||||||||||||||* targets:607   GGCGGAGGAUCUCAAGUUUGU   627 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384835 (LOC100384835), mRNA	NA	coding protein	psRNATarget
BT084330.1	ncRNA:21   CAGUUUCCUAGAGUUCAAACU   1   |*|==|||||||||||||||* targets:607   GGCGGAGGAUCUCAAGUUUGU   627 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0101J07 mRNA, complete cds	NA	coding protein	psRNATarget