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BaseInfo

ncRNA ID	novel_zma_miR4454
Species	Zea mays
Class	miRNA
Genome position	Chr10:35075914-35076008 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR2089706
Length	21
Mature sequence(if miRNA)	75 - AAAGUGUGGCAAGUUAGACAG - 95
Stem-loop(if miRNA)	--GG      A         -- UGCCUAAGGUUAGUCGUUCAAAUUGA     CUAACU UGCCACACU  U                          A     |||||| |||||||||  |     GAUUGA ACGGUGUGA  C                          G GACA      -         AA GGAUUGAAAAAACGGAUUCCAAUCAA
Stem-loop sequence	GGCUAACUAUGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAGAACUAACCUUAGGCAAAAAAGUUAGGCAAAGUGUGGCAAGUUAGACAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057573.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   ||||||||=|||||||||||| targets:250   CUGUCUAAUUUGCCACACUUU   270 Target Full Sequence	1.5	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
BT083952.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *|||||||||||||||||||| targets:1483   GUGUCUAACUUGCCACACUUU   1503 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *|||||||||||||||||||| targets:3007   AUGUCUAACUUGCCACACUUU   3027 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *|||||||||||||||||||| targets:3135   AUGUCUAACUUGCCACACUUU   3155 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *|||||||||||||||||||| targets:3142   AUGUCUAACUUGCCACACUUU   3162 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
HI403392.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:18   CUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:18   CUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:18   CUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
EU968686.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:622   CUGCCUAACUUGCCACACUUU   642 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:605   CUGCCUAACUUGCCACACUUU   625 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||||||||||| targets:640   CUGCCUAACUUGCCACACUUU   660 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||=|||||||| targets:18   CUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||=|||||||| targets:18   CUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||||||=|||||||| targets:18   CUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
JB163753.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*=|||||||||||||||| targets:18   CUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*=|||||||||||||||| targets:18   CUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*=|||||||||||||||| targets:18   CUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*|||||||||||||=||| targets:692   CUGCCUAACUUGCCACAUUUU   712 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT033837.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:930   AUGCCUAACUUGCCACACUUU   950 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:1418   AUGCCUAACUUGCCACACUUU   1438 Target Full Sequence	1.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:1428   AUGCCUAACUUGCCACACUUU   1448 Target Full Sequence	1.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
BT018862.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:1048   GUGCCUAACUUGCCACACUUU   1068 Target Full Sequence	1.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:709   AUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:709   AUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:709   AUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||||||||||||||| targets:2674   AUGGCUAACUUGCCACACUUU   2694 Target Full Sequence	1.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   |||*||||*|||||||||||| targets:6   CUGCCUAAGUUGCCACACUUU   26 Target Full Sequence	2.5	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
AY109434.1	ncRNA:21   GACAGAUUGAACGGUGUGAAA   1   *||*||||*|||||||||||| targets:398   AUGCCUAAGUUGCCACACUUU   418 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget