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BaseInfo

ncRNA ID	novel_zma_miR4446
Species	Zea mays
Class	miRNA
Genome position	Chr1:234515261-234515310 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR5100248;SRR5100255;SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	27 - ACAUUUUUUGAACCAAACGGCACC - 50
Stem-loop(if miRNA)	--       U  A      C   AC   ACAUUUU UG ACCAAA GGC  C   ||||||| || |||||| |||   UGUAAAG AU UGGUUU CUG  U AG       U  A      A   GU
Stem-loop sequence	ACAUUUUUUGAACCAAACGGCACCUUGGUCAUUUGGUAUAUGAAAUGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968125.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||||||||| targets:1068   GGUGCUGUUUGGUUCAAAAAAUGU   1091 Target Full Sequence	1.0	Zea mays clone 314810 beta-expansin 3 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT033577.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||||||||| targets:2143   GGUGCUGUUUGGUUCAAAAAAUGU   2166 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0346G15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111750.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||||||||| targets:2224   GGUGCUGUUUGGUUCAAAAAAUGU   2247 Target Full Sequence	1.0	Zea mays CRS2-associated factor 1 (CAF1), mRNA	NA	coding protein	psRNATarget
AY264368.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||||||||| targets:2220   GGUGCUGUUUGGUUCAAAAAAUGU   2243 Target Full Sequence	1.0	Zea mays CRS2-associated factor 1 (CAF1) mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
EU963423.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||=|||||| targets:876   GGUGCUGUUUGGUUCAAGAAAUGU   899 Target Full Sequence	2.5	Zea mays clone 262157 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035964.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||=|||||| targets:1278   GGUGCUGUUUGGUUCAAGAAAUGU   1301 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089P13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670426.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||=|||||||||||=|||||| targets:1479   GGUGCUGUUUGGUUCAAGAAAUGU   1502 Target Full Sequence	2.5	PREDICTED: Zea mays Casein kinase II subunit alpha (gpm388c), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066252.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   ||||==|||||||||||=|||||| targets:1478   GGUGUUGUUUGGUUCAAGAAAUGU   1501 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT066252.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   ||||==|||||||||||=|||||| targets:1527   GGUGUUGUUUGGUUCAAGAAAUGU   1550 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133N23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657243.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||*|||||||||||=|||||| targets:1496   GGUGCGGUUUGGUUCAAGAAAUGU   1519 Target Full Sequence	2.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657245.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||||*|||||||||||=|||||| targets:1406   GGUGCGGUUUGGUUCAAGAAAUGU   1429 Target Full Sequence	2.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054939.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   ||||==||||||||||*||||||| targets:2281   GGUGUUGUUUGGUUCACAAAAUGU   2304 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076N03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291850.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   ||||==||||||||||*||||||| targets:2281   GGUGUUGUUUGGUUCACAAAAUGU   2304 Target Full Sequence	2.5	Zea mays cysteine-type peptidase (LOC103164604), mRNA	NA	coding protein	psRNATarget
XM_008649877.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   |||*|=|||||||||||=|||||| targets:3528   GGUACUGUUUGGUUCAAGAAAUGU   3551 Target Full Sequence	2.5	PREDICTED: Zea mays Oligopeptide transporter 7 (LOC100383021), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663821.2	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   ||||*|||||||||||*||||||| targets:1151   GGUGACGUUUGGUUCAUAAAAUGU   1174 Target Full Sequence	1.5	PREDICTED: Zea mays salt tolerance-like protein (LOC100285359), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU942132.1	ncRNA:24   CCACGGCAAACCAAGUUUUUUACA   1   **||=|||||||||||*||||||| targets:108   CCUGUCGUUUGGUUCACAAAAUGU   131 Target Full Sequence	1.5	Zea mays clone 1476687 mRNA sequence	NA	coding protein	psRNATarget
EU952170.1	ncRNA:24   CC-ACGGCAAACCAAGUUUUUUACA   1   ||-|*|=||||||||||*||||||| targets:1589   GGAUCCUGUUUGGUUCACAAAAUGU   1613 Target Full Sequence	2.5	Zea mays clone 1215803 mRNA sequence	NA	coding protein	psRNATarget
EU940920.1	ncRNA:24   CC-ACGGCAAACCAAGUUUUUUACA   1   ||-|*|=||||||||||*||||||| targets:1589   GGAUCCUGUUUGGUUCACAAAAUGU   1613 Target Full Sequence	2.5	Zea mays clone 1213507 mRNA sequence	NA	coding protein	psRNATarget