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BaseInfo

ncRNA ID	novel_zma_miR4443
Species	Zea mays
Class	miRNA
Genome position	Chr9:155592341-155592470 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	107 - AGGGCUUGUUCGUUUCUAUCGGAU - 130
Stem-loop(if miRNA)	--   G                    --  CACCCGGAAUUAUUUCACCUAAUCAAAGUUUAUAUA   AGG CUUGUUCGUUUCUAUCGGAU  UG                                    A   ||| ||||||||||||||||||||  ||   UCC GAACAAGCAAAGAUGGCCUA  CA                                    A AC   G                    AA  CCUAACCUUGCUAACGAUUGGCCUAACAAAGAGAUU
Stem-loop sequence	AGGGCUUGUUCGUUUCUAUCGGAUUGCACCCGGAAUUAUUUCACCUAAUCAAAGUUUAUAUAAAUUAGAGAAACAAUCCGGUUAGCAAUCGUUCCAAUCCACAAAUCCGGUAGAAACGAACAAGGCCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405945.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4070 from Patent EP2074227	NA	coding protein	psRNATarget
JB166406.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238075.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4070 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238060.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:115   AUCCGAUAGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4055 from Patent EP2985353	NA	coding protein	psRNATarget
HI405930.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:115   AUCCGAUAGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4055 from Patent EP2074227	NA	coding protein	psRNATarget
JB166391.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:115   AUCCGAUAGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4055 from Patent EP2559767	NA	coding protein	psRNATarget
BT035867.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:601   AUCCGAUAGAAACGAACAAGGCCU   624 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138677.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:601   AUCCGAUAGAAACGAACAAGGCCU   624 Target Full Sequence	1.5	Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA	NA	coding protein	psRNATarget
BT084172.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:616   AUCCGAUAGAAACGAACAAGGCCU   639 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds	NA	coding protein	psRNATarget
AY103713.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:631   AUCCGAUAGAAACGAACAAGGCCU   654 Target Full Sequence	1.5	Zea mays PCO076540 mRNA sequence	NA	coding protein	psRNATarget
XM_008668968.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:690   AUCCGAUAGAAACGAACAAGGCCU   713 Target Full Sequence	1.5	PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001156428.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:1553   AUCCGAUAGAAACGAACAAGGCCU   1576 Target Full Sequence	1.5	Zea mays agmatine deiminase (LOC100283528), mRNA	NA	coding protein	psRNATarget
EU965022.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:1553   AUCCGAUAGAAACGAACAAGGCCU   1576 Target Full Sequence	1.5	Zea mays clone 283266 agmatine deiminase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674095.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||||||||||||||*||| targets:2158   AUCCGAUAGAAACGAACAAGGCCU   2181 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS69), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166265.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||||=||||||||||||*||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237934.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||||=||||||||||||*||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2985353	NA	coding protein	psRNATarget
HI405804.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||||=||||||||||||*||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2074227	NA	coding protein	psRNATarget
EU953779.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||||=||||||||||||*||| targets:724   AUCCGAUGGAAACGAACAAGGCCU   747 Target Full Sequence	2.5	Zea mays clone 1445891 mRNA sequence	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||=||||||||||||||*||| targets:658   AUCCGGUAGAAACGAACAAGGCCU   681 Target Full Sequence	2.5	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||=||||||||||||||*||| targets:2686   AUCCGGUAGAAACGAACAAGGCCU   2709 Target Full Sequence	2.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |||||=||||||||||||||*||| targets:2689   AUCCGGUAGAAACGAACAAGGCCU   2712 Target Full Sequence	2.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||*|||||||||||*||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||*|||||||||||*||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||||*|||||||||||*||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
BT068430.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:557   AUCCGACAGAAACGAACAAGACCU   580 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:1925   AUCCGACAGAAACGAACAAGGCCU   1948 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:1999   AUCCGACAGAAACGAACAAGGCCU   2022 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:2017   AUCCGACAGAAACGAACAAGGCCU   2040 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:2093   AUCCGACAGAAACGAACAAGGCCU   2116 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI405907.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	3.0	Sequence 4032 from Patent EP2074227	NA	coding protein	psRNATarget
JB166368.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	3.0	Sequence 4032 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238037.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	3.0	Sequence 4032 from Patent EP2985353	NA	coding protein	psRNATarget
EZ056395.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:138   AUCCGACGUAAACGAACAAGCCCU   161 Target Full Sequence	3.0	TSA: Zea mays contig57517, mRNA sequence	NA	coding protein	psRNATarget
BT019200.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:1045   AUCCGACGCAAACGAACAAGCCCU   1068 Target Full Sequence	3.0	Zea mays clone Contig873.F mRNA sequence	NA	coding protein	psRNATarget
XM_008647453.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:3374   AUCCGACGCAAACGAACAAGCCCU   3397 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647452.2	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   ||||||*=*||||||||||||||| targets:3362   AUCCGACGCAAACGAACAAGCCCU   3385 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT083841.2	ncRNA:24   UAGG-----CUAUCUUUGCUUGUUCGGGA   1   ||||-----|||*||||||||||=||||| targets:591   AUCCAUAUGGAUCGAAACGAACAGGCCCU   619 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044O07 mRNA, complete cds	NA	coding protein	psRNATarget
EZ073175.1	ncRNA:24   UAGGCUAUCUUUGCUUGUUCGGGA   1   |*||||*|||||||||||||*||| targets:63   AACCGACAGAAACGAACAAGGCCU   86 Target Full Sequence	2.5	TSA: Zea mays contig08812, mRNA sequence	NA	coding protein	psRNATarget
EZ080006.1	ncRNA:24   UAGG-----------CUAUCUUUGCUUGUUCGGGA   1   ||||-----------|=|||||*|||||||||||| targets:37   AUCCAUAUGGAUUGGGGUAGAACCGAACAAGCCCU   71 Target Full Sequence	2.5	TSA: Zea mays contig15645, mRNA sequence	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UAGG-----------CUAUCUUUGCUUGUUCGGGA   1   ||||-----------|=|||||*|||||||||||| targets:477   AUCCAUAUGAAUUGGGGUAGAACCGAACAAGCCCU   511 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget