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BaseInfo

ncRNA ID novel_zma_miR4441
Species Zea mays
Class miRNA
Genome position Chr1:257213940-257213998 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR1618883
Length 24
Mature sequence(if miRNA) 36 - ACACUCGGCAAAGAACUCGCCAGG - 59
Stem-loop(if miRNA) --A               UC C  -   AG
   CACUCGGCAAAGAAC  G CA GGG  G
   |||||||||||||||  | || |||
   GUGAGCUGUUUCUUG  C GU CCC  G
AUC               GA U  A   CU
Stem-loop sequence ACACUCGGCAAAGAACUCGCCAGGGAGGGUCCCCAUGUCAGGUUCUUUGUCGAGUGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI407068.1
ncRNA:24   GGACCGCUCAAGAAACGGCUCACA   1
  *||||||=*||||||||||||||*
targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64

3.0 Sequence 5193 from Patent EP2074227 NA coding protein psRNATarget
LQ239198.1
ncRNA:24   GGACCGCUCAAGAAACGGCUCACA   1
  *||||||=*||||||||||||||*
targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64

3.0 Sequence 5193 from Patent EP2985353 NA coding protein psRNATarget
JB167529.1
ncRNA:24   GGACCGCUCAAGAAACGGCUCACA   1
  *||||||=*||||||||||||||*
targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64

3.0 Sequence 5193 from Patent EP2559767 NA coding protein psRNATarget
XM_008680068.2
ncRNA:24   GGACCGCUC--AAGAAACGGCUCACA   1
  ==||*||||--|||||||||||||||
targets:187   UUUGUCGAGCCUUCUUUGCCGAGUGU   212

2.5 PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA NA coding protein psRNATarget
HI406203.1
ncRNA:23   GACCGCUCAAGAAACGGCUCACA   1
  |||*||=*|||||||||||||||
targets:1   CUGACGGAUUCUUUGCCGAGUGU   23

2.0 Sequence 4328 from Patent EP2074227 NA coding protein psRNATarget
JB166664.1
ncRNA:23   GACCGCUCAAGAAACGGCUCACA   1
  |||*||=*|||||||||||||||
targets:1   CUGACGGAUUCUUUGCCGAGUGU   23

2.0 Sequence 4328 from Patent EP2559767 NA coding protein psRNATarget
LQ238333.1
ncRNA:23   GACCGCUCAAGAAACGGCUCACA   1
  |||*||=*|||||||||||||||
targets:1   CUGACGGAUUCUUUGCCGAGUGU   23

2.0 Sequence 4328 from Patent EP2985353 NA coding protein psRNATarget
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