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BaseInfo

ncRNA ID	novel_zma_miR4435
Species	Zea mays
Class	miRNA
Genome position	Chr1:265800757-265800886 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	107 - CUGCACCAGGUCGCGGACUGUCCG - 130
Stem-loop(if miRNA)	--      C   UC      U     -  C -U U   GC    C       -    ACCA   A   C   CUGCAC AGG  GCGGAC GUCCG GC C  G GCC  GGAC GUCCGCG UCUG    GAG GCG C   |||||| |||  |||||| ||||| || |  | |||  |||| ||||||| ||||    ||| |||   GACGUG UCC  CGCCUG CAGGC CG G  C CGG  CCUG CAGGCGC GGAC    CUC CGC G GA      -   -C      C     G  C UC C   --    C       C    CACG   -   C
Stem-loop sequence	CUGCACCAGGUCGCGGACUGUCCGGCCCUGUGCCGCGGACCGUCCGCGUCUGACCAGAGAGCGCCGCCGCCUCGCACCAGGCCGCGGACCGUCCGGCCCCUGCGCGCGGACCGUCCGCCCCUGUGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968855.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||||||| targets:724   CGGACGGUCCGCGACCUGGUGCAG   747 Target Full Sequence	1.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EZ104830.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:46   CGGACGGUCCGCGACCUGGCGCAG   69 Target Full Sequence	2.5	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:31   CGGACGGUCCGCGACCUGGCGCAG   54 Target Full Sequence	2.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:27   CGGACGGUCCGCGACCUGGCGCAG   50 Target Full Sequence	2.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:216   CGGACGGUCCGCGACCUGGCGCAG   239 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:688   CGGACGGUCCGCGACCUGGCGCAG   711 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:1684   CGGACGGUCCGCGACCUGGCGCAG   1707 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |||||=|||||||||||||*|||| targets:1684   CGGACGGUCCGCGACCUGGCGCAG   1707 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |*|||=|||||||||||||*|||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	2.5	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
JB170256.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |*|||=|||||||||||||*|||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	2.5	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
HI409795.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |*|||=|||||||||||||*|||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	2.5	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   GCCUGUCAGGCGCUGGACCACGUC   1   |*|||=|||||||||||||*|||| targets:452   CAGACGGUCCGCGACCUGGCGCAG   475 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget