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BaseInfo

ncRNA ID	ath-miRf10052-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AGUUGUUGGUUCAACAACAU - NA
Stem-loop(if miRNA)	U      A                -  U UU   U   GAU GCC AAAUAU UUGUUGAACCAACAAC AU A  UGG CAU   C ||| |||||| |||||||||||||||| || |  ||| |||   A CGG UUUAUA AACAACUUGGUUGUUG UG U  GCC GUA   A    U      C                A  U UU   U   ACA
Stem-loop sequence	GCCUAAAUAUAUUGUUGAACCAACAACAUUAUUUGGUCAUGAUCAAACAAUGUCCGUUUUGUAGUUGUUGGUUCAACAACAUAUUUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY075622.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||||||||||||| targets:1618   AUGUUGUUGAACCAACAACU   1637 Target Full Sequence	0.0	Arabidopsis thaliana At1g51680/F19C24_11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_179462.2	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||||||||||||| targets:1618   AUGUUGUUGAACCAACAACU   1637 Target Full Sequence	0.0	Arabidopsis thaliana 4-coumarate:CoA ligase 1 (4CL1), mRNA	4-coumarate:CoA ligase 1(4CL1)	coding protein	psRNATarget
AK220704.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:408   GUGUUUUUGAACCAACAACU   427 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit A, complete cds, clone: RAFL21-99-K21	NA	coding protein	psRNATarget
AK317653.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:453   GUGUUUUUGAACCAACAACU   472 Target Full Sequence	1.0	Arabidopsis thaliana AT1G78900 mRNA, partial cds, clone: RAFL22-33-H09	NA	coding protein	psRNATarget
AK221853.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:1079   GUGUUUUUGAACCAACAACU   1098 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit A, complete cds, clone: RAFL22-08-A11	NA	coding protein	psRNATarget
AK317694.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:1485   GUGUUUUUGAACCAACAACU   1504 Target Full Sequence	1.0	Arabidopsis thaliana AT1G78900 mRNA, partial cds, clone: RAFL24-05-O10	NA	coding protein	psRNATarget
AY059909.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2085   GUGUUUUUGAACCAACAACU   2104 Target Full Sequence	1.0	Arabidopsis thaliana vacuolar type ATPase subunit A (F9K20.5) mRNA, complete cds	NA	coding protein	psRNATarget
BX817720.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2065   GUGUUUUUGAACCAACAACU   2084 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZG04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
U65638.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:1987   GUGUUUUUGAACCAACAACU   2006 Target Full Sequence	1.0	Arabidopsis thaliana vacuolar type ATPase subunit A mRNA, complete cds	NA	coding protein	psRNATarget
AY081296.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2085   GUGUUUUUGAACCAACAACU   2104 Target Full Sequence	1.0	Arabidopsis thaliana ATPase subunit A mRNA, complete cds	NA	coding protein	psRNATarget
AY085759.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2085   GUGUUUUUGAACCAACAACU   2104 Target Full Sequence	1.0	Arabidopsis thaliana clone 17815 mRNA, complete sequence	NA	coding protein	psRNATarget
AK317358.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2182   GUGUUUUUGAACCAACAACU   2201 Target Full Sequence	1.0	Arabidopsis thaliana AT1G78900 mRNA, complete cds, clone: RAFL23-23-D24	NA	coding protein	psRNATarget
NM_001036222.3	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2225   GUGUUUUUGAACCAACAACU   2244 Target Full Sequence	1.0	Arabidopsis thaliana vacuolar ATP synthase subunit A (VHA-A), mRNA	vacuolar ATP synthase subunit A(VHA-A)	coding protein	psRNATarget
NM_106539.6	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2184   GUGUUUUUGAACCAACAACU   2203 Target Full Sequence	1.0	Arabidopsis thaliana vacuolar ATP synthase subunit A (VHA-A), mRNA	vacuolar ATP synthase subunit A(VHA-A)	coding protein	psRNATarget
AK230248.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   =||||*|||||||||||||| targets:2453   GUGUUUUUGAACCAACAACU   2472 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit A, complete cds, clone: RAFL23-15-F22	NA	coding protein	psRNATarget
DQ202264.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||=|||||||||| targets:1112   AUGUUGUUGGACCAACAACU   1131 Target Full Sequence	1.5	Arabidopsis thaliana putative nucleic-acid binding protein (MOS2) mRNA, complete cds	NA	coding protein	psRNATarget
BT006036.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||=|||||||||| targets:1112   AUGUUGUUGGACCAACAACU   1131 Target Full Sequence	1.5	Arabidopsis thaliana clone U18978 unknown protein (At1g33520) mRNA, complete cds	NA	coding protein	psRNATarget
AY091044.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||=|||||||||| targets:1189   AUGUUGUUGGACCAACAACU   1208 Target Full Sequence	1.5	Arabidopsis thaliana unknown protein (At1g33520) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103076.4	ncRNA:20   UACAACAACUUGGUUGUUGA   1   |||||||||=|||||||||| targets:1361   AUGUUGUUGGACCAACAACU   1380 Target Full Sequence	1.5	Arabidopsis thaliana D111/G-patch domain-containing protein (MOS2), mRNA	D111/G-patch domain-containing protein(MOS2)	coding protein	psRNATarget
BX814081.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||||*|||||=||||||| targets:980   CUGUUGCUGAACUAACAACU   999 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX817113.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||||*|||||=||||||| targets:1006   CUGUUGCUGAACUAACAACU   1025 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZA10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK318732.2	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:1103   CUGUAGUUGAACCAACAGCU   1122 Target Full Sequence	2.5	Arabidopsis thaliana AT4G33500 mRNA, complete cds, clone: RAFL14-10-E22	NA	coding protein	psRNATarget
BX826361.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:897   UUGUAGUUGAACCAACAGCU   916 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZF01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY051052.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:1031   CUGUAGUUGAACCAACAGCU   1050 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At4g33500) mRNA, complete cds	NA	coding protein	psRNATarget
AK227170.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:1140   CUGUAGUUGAACCAACAGCU   1159 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-88-F03	NA	coding protein	psRNATarget
AY035047.1	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:1087   CUGUAGUUGAACCAACAGCU   1106 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At4g33500) mRNA, complete cds	NA	coding protein	psRNATarget
NM_119504.4	ncRNA:20   UACAACAACUUGGUUGUUGA   1   *|||*||||||||||||=|| targets:1171   CUGUAGUUGAACCAACAGCU   1190 Target Full Sequence	2.5	Arabidopsis thaliana Protein phosphatase 2C family protein mRNA	Protein phosphatase 2C family protein(AT4G33500)	coding protein	psRNATarget