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BaseInfo

ncRNA ID novel_zma_miR4429
Species Zea mays
Class miRNA
Genome position Chr8:25445-25644 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 22
Mature sequence(if miRNA) 1 - UGGCCAUUGAUCGUUGACCAGA - 22
Stem-loop(if miRNA) -   -                   A    C      -             U   -  AA  A                      A  CCAACUCAAUUUUC
 CUG UCAAUGAUCAAUGGCCGCA AACC CCAUUU UGUCGAAAAUAGC UGA CG  CA UUUUCAAUAAUACCGAAGGCUA GA              A
 ||| ||||||||||||||||||| |||| |||||| ||||||||||||| ||| ||  || |||||||||||||||||||||| ||              C
 GAC AGUUGCUAGUUACCGGUGU UUGG GGUAAA ACAGCUUUUAUCG ACU GC  GU AAAAGUUAUUAUGGUUUCCGAU UG              C
A   C                   G    C      C             U   U  GG  -                      G  UAAGAACCUACAGA
Stem-loop sequence CUGUCAAUGAUCAAUGGCCGCAAAACCCCCAUUUUGUCGAAAAUAGCUUGACGAACAAUUUUCAAUAAUACCGAAGGCUAAGACCAACUCAAUUUUCACCAGACAUCCAAGAAUGUGUAGCCUUUGGUAUUAUUGAAAAUGGGCGUUCAUGCUAUUUUCGACACAAAUGGCGGUUGUGUGGCCAUUGAUCGUUGACCAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402929.1
ncRNA:22   AGACCAGUUGCUAGUUACCGGU   1
  |||||||||=||||||||||||
targets:29   UCUGGUCAAUGAUCAAUGGCCA   50

1.5 Sequence 1054 from Patent EP2074227 NA coding protein psRNATarget
JB163390.1
ncRNA:22   AGACCAGUUGCUAGUUACCGGU   1
  |||||||||=||||||||||||
targets:29   UCUGGUCAAUGAUCAAUGGCCA   50

1.5 Sequence 1054 from Patent EP2559767 NA coding protein psRNATarget
LQ235059.1
ncRNA:22   AGACCAGUUGCUAGUUACCGGU   1
  |||||||||=||||||||||||
targets:29   UCUGGUCAAUGAUCAAUGGCCA   50

1.5 Sequence 1054 from Patent EP2985353 NA coding protein psRNATarget