Search result

BaseInfo

ncRNA ID	novel_zma_miR4428
Species	Zea mays
Class	miRNA
Genome position	Chr8:4856339-4856474 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287163;SRR2287164
Length	21
Mature sequence(if miRNA)	1 - AUCUAGAGUGACGAAUAACAU - 21
Stem-loop(if miRNA)	--                   A           UC   A    GC        -AA    GA  GACU   GUUAUUUGUCACUCUAGAU GUGAUCACUCA  CUA AAUG  UUAACGAA   UCGU  AU    U   ||||||||||||||||||| |||||||||||  ||| ||||  ||||||||   ||||  ||    A   CAAUAAGCAGUGAGAUCUA UAUUAGUGGGU  GAU UUAC  GAUUGUUU   AGUA  UA    A UA                   C           GA   G    UA        AGA    AC  AAAC
Stem-loop sequence	GUUAUUUGUCACUCUAGAUAGUGAUCACUCAUCCUAAAAUGGCUUAACGAAAAUCGUGAAUGACUUAACAAAAUCAAUGAAGAUUUGUUAGAUCAUUGUAGAGUGGGUGAUUAUCAUCUAGAGUGACGAAUAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001174896.1	ncRNA:21   UACAAUAAGCAGUGAGAUCUA   1   **||*||||||||||||*||| targets:831   UCGUAAUUCGUCACUCUCGAU   851 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382135 (LOC100382135), mRNA	NA	coding protein	psRNATarget
BT063282.2	ncRNA:21   UACAAUAAGCAGUGAGAUCUA   1   **||*||||||||||||*||| targets:831   UCGUAAUUCGUCACUCUCGAU   851 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047I02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658768.2	ncRNA:21   UACAAUAAGCAGUGAGAUCUA   1   **||*||||||||||||*||| targets:97   UCGUAAUUCGUCACUCUCGAU   117 Target Full Sequence	2.5	PREDICTED: Zea mays pectin acetylesterase 5 (LOC103636409), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658767.2	ncRNA:21   UACAAUAAGCAGUGAGAUCUA   1   **||*||||||||||||*||| targets:104   UCGUAAUUCGUCACUCUCGAU   124 Target Full Sequence	2.5	PREDICTED: Zea mays pectin acetylesterase 5 (LOC103636409), transcript variant X1, mRNA	NA	coding protein	psRNATarget