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BaseInfo

ncRNA ID novel_zma_miR4417
Species Zea mays
Class miRNA
Genome position Chr10:109174564-109174744 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 1 - AUACAGUGGUAGAGUAGGCAAUGA - 24
Stem-loop(if miRNA) --   A                         A           C            AAAAUACAA                 G   CAAAAA
  AUU CCUACUCUACCACUGUAUAAAAUUU AAGUUCAAAUU AUCAUAUGUUAA         AAAAGAGAAAAUUGUGA AUA      A
  ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||         ||||||||||||||||| |||      G
  UAA GGAUGAGAUGGUGACAUAUUUUAAA UUCAAGUUUAA UAGUAUAUAAUU         UUUUUUCUUUUAAUACU UAU      U
AG   C                         A           A            ----CUCUA                 A   UAAAAG
Stem-loop sequence AUUACCUACUCUACCACUGUAUAAAAUUUAAAGUUCAAAUUCAUCAUAUGUUAAAAAAUACAAAAAAGAGAAAAUUGUGAGAUACAAAAAAGUGAAAAUUAUAUCAUAAUUUUCUUUUUUAUCUCUUAAUAUAUGAUAAAUUUGAACUUAAAAUUUUAUACAGUGGUAGAGUAGGCAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008657758.2
ncRNA:24   AGUAACGGAUGAGAUGGUGACAUA   1
  *==|*||||||*|||||||||||*
targets:39   CUGUAGCCUACGCUACCACUGUAG   62

2.5 PREDICTED: Zea mays methylesterase 7 (LOC103635265), mRNA NA coding protein psRNATarget