Search result

BaseInfo

ncRNA ID novel_zma_miR4413
Species Zea mays
Class miRNA
Genome position Chr8:173731417-173731464 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 25 - UUGGGUAGACGGGUAUGGGUUGGU - 48
Stem-loop(if miRNA) -U                   UG
  UGGGUAGACGGGUAUGGGU  G
  |||||||||||||||||||  U
  AUCCAUCUGUCCAUACCCA  A
AU                   UU
Stem-loop sequence UUGGGUAGACGGGUAUGGGUUGGUAUUACCCAUACCUGUCUACCUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552401.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1554   AUCAAUCCAUAUCCGUCUACCCAA   1577

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008679607.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1556   AUCAAUCCAUAUCCGUCUACCCAA   1579

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008679614.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1555   AUCAAUCCAUAUCCGUCUACCCAA   1578

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020552403.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1552   AUCAAUCCAUAUCCGUCUACCCAA   1575

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020552402.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1554   AUCAAUCCAUAUCCGUCUACCCAA   1577

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020552400.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1557   AUCAAUCCAUAUCCGUCUACCCAA   1580

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008679610.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1556   AUCAAUCCAUAUCCGUCUACCCAA   1579

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008679609.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1555   AUCAAUCCAUAUCCGUCUACCCAA   1578

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008679611.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1558   AUCAAUCCAUAUCCGUCUACCCAA   1581

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008679606.2
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1556   AUCAAUCCAUAUCCGUCUACCCAA   1579

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552399.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  |=|||=|||||=||||||||||||
targets:1556   AUCAAUCCAUAUCCGUCUACCCAA   1579

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X3, mRNA NA coding protein psRNATarget
EU971216.1
ncRNA:24   UGGUUGGGUAUGGGCAGAUGGGUU   1
  ||=|-|||||||||||||||||=*
targets:1526   ACUA-CCCAUACCCGUCUACCCGU   1548

2.5 Zea mays clone 359745 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.