Search result

BaseInfo

ncRNA ID	osa-miRf10038-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - CCGGUUGGUAUUACCAACCGGGA - NA
Stem-loop(if miRNA)	U   U                   UCAUCUUUAG      UUC  AUGCUGUCA AUCUUUAGUCCCGGUU GUG UACCAACCGGGACUAAAGA          UCCCGG   GA         G |||||||||||||||| ||| |||||||||||||||||||          ||||||   ||         G UAGAAAUCAGGGCCAA CAU AUGGUUGGCCCUGAUUUCU          AGGGCC   CC         U                 C   U                   ----------      CCC  GGACUGUAC
Stem-loop sequence	AUCUUUAGUCCCGGUUUGUGUUACCAACCGGGACUAAAGAUCAUCUUUAGUCCCGGUUCGAAUGCUGUCAGGUCAUGUCAGGCCCCCCCGGGAUCUUUAGUCCCGGUUGGUAUUACCAACCGGGACUAAAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404518.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |=||||||||||||||||||=|| targets:4   UUCCGGUUGGUAAUACCAACUGG   26 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |=||||||||||||||||||=|| targets:4   UUCCGGUUGGUAAUACCAACUGG   26 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
JB164979.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |=||||||||||||||||||=|| targets:4   UUCCGGUUGGUAAUACCAACUGG   26 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   *|||||||||||||||||||||| targets:1378   CCCCGGUUGGUAAUACCAACCGG   1400 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||*|*||||||||||| targets:2298   UCCCGGUUGUUUAUACCAACCGG   2320 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   ||==||||||||||||||||||| targets:362   UCUUGGUUGGUAAUACCAACCGG   384 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||||||*||||||||| targets:667   UCCCGGUUGGUAACACCAACCGG   689 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||||||*||||||||| targets:247   UCCCGGUUGGUAACACCAACCGG   269 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||||||*||||||||| targets:1852   UCCCGGUUGGUAACACCAACCGG   1874 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||||||*||||||||| targets:56   UCCCGGUUGGUAACACCAACCGG   78 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK119354.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||=|||||||||*||||||||| targets:74   UCCUGGUUGGUAACACCAACCGG   96 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015792800.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||=|||||||||*||||||||| targets:683   UCCUGGUUGGUAACACCAACCGG   705 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346359 (LOC4346359), transcript variant X3, mRNA	uncharacterized LOC4346359(LOC4346359)	coding protein	psRNATarget
AK121472.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |=|||||||||||*||||||||| targets:2069   UUCCGGUUGGUAACACCAACCGG   2091 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   *||||||||||||*||||||||| targets:1320   CCCCGGUUGGUAACACCAACCGG   1342 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK099726.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |*||||||||||=|||||||||* targets:1101   UACCGGUUGGUAGUACCAACCGA   1123 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:23   AGGGCCAACCAUUAUGGUUGGCC   1   |||||||||*|*||||||||||| targets:1571   UCCCGGUUGUUUAUACCAACCGG   1593 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:23   AGG-GCCAACCAUUAUGGUUGGCC   1   |||-|||||*||||*||||||||| targets:1986   UCCUCGGUUAGUAACACCAACCGG   2009 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget