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BaseInfo

ncRNA ID	novel_zma_miR4408
Species	Zea mays
Class	miRNA
Genome position	Chr7:122242199-122242363 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287163;SRR2089701;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AAGAAAACACUCGGCGAAGAGGCU - 24
Stem-loop(if miRNA)	--A                    G                                                       CACA    AGAAAACACUCGGCGAAGAG CUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGGGCUCUUUGCCGAGUGU    A    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    UUUUUUGUGAGCUGUUUCUC GAGAAACGGCUCACAAAAUAAAAACUGUGAGCCGUUUCUCGAGAAACGGCUCACA    A CUC                    -                                                       ACAU
Stem-loop sequence	AAGAAAACACUCGGCGAAGAGGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGGGCUCUUUGCCGAGUGUCACAAAUACAACACUCGGCAAAGAGCUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGCAAAGAGCUCUUUGUCGAGUGUUUUUUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   ||==||||=|=||||||||||||| targets:84   AGUUUCUUUGUCGAGUGUUUUCUU   107 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   ||==||||=|=||||||||||||| targets:84   AGUUUCUUUGUCGAGUGUUUUCUU   107 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   ||==||||=|=||||||||||||| targets:2103   AGUUUCUUUGUCGAGUGUUUUCUU   2126 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   ||==||||=|=||||||||||||| targets:2103   AGUUUCUUUGUCGAGUGUUUUCUU   2126 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   |||-||||=||||||||||||=|| targets:106   AGC-UCUUUGCCGAGUGUUUUUUU   128 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   |||-||||=||||||||||||=|| targets:106   AGC-UCUUUGCCGAGUGUUUUUUU   128 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   |||-||||=||||||||||||=|| targets:106   AGC-UCUUUGCCGAGUGUUUUUUU   128 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   =|*=||||=||||||||||||=|| targets:590   GGGUUCUUUGCCGAGUGUUUUUUU   613 Target Full Sequence	2.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU958868.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:612   AGUUAUUCUACGCCGAGUAUUUUCUU   637 Target Full Sequence	2.5	Zea mays clone 208133 mRNA sequence	NA	coding protein	psRNATarget
NM_001146962.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:968   AGUUAUUCUACGCCGAGUAUUUUCUU   993 Target Full Sequence	2.5	Zea mays Small RNA degrading nuclease 3 (LOC100272493), mRNA	NA	coding protein	psRNATarget
BT038826.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:968   AGUUAUUCUACGCCGAGUAUUUUCUU   993 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0332H01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543534.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:1017   AGUUAUUCUACGCCGAGUAUUUUCUU   1042 Target Full Sequence	2.5	PREDICTED: Zea mays Small RNA degrading nuclease 3 (LOC100272493), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034581.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:1299   AGUUAUUCUACGCCGAGUAUUUUCUU   1324 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0001M07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137783.1	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:1299   AGUUAUUCUACGCCGAGUAUUUUCUU   1324 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192568 (LOC100192568), mRNA	NA	coding protein	psRNATarget
XM_008668872.2	ncRNA:24   UCGG--AGAAGCGGCUCACAAAAGAA   1   ||==--|||*||||||||*||||||| targets:1448   AGUUAUUCUACGCCGAGUAUUUUCUU   1473 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100192568 (LOC100192568), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654748.2	ncRNA:24   UCGGAGAAGCGGCUCACAAAAGAA   1   ||--|*||=||||||||||||||* targets:14   AG--UGUUUGCCGAGUGUUUUCUA   35 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103633067 (LOC103633067), mRNA	NA	coding protein	psRNATarget