Search result

BaseInfo

ncRNA ID	novel_zma_miR4407
Species	Zea mays
Class	miRNA
Genome position	Chr9:111764892-111765015 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	21
Mature sequence(if miRNA)	1 - CCACUUACUCCCAAACAAGCC - 21
Stem-loop(if miRNA)	--UUUA     A      -  U   AG    GG    A       U    CU  -      CAA       UUUGG AGUAAG GG AAU  AGGG  UUGG GGGGUUA AAUC  CU ACUAUU   U       ||||| |||||| || |||  ||||  |||| ||||||| ||||  || ||||||       AAACC UCAUUC CC UUA  UCCC  AACU UCCCGAU UUAG  GA UGAUAA   U CCGAAC     C      A  -   CU    AU    A       C    -U  C      AUU
Stem-loop sequence	UUUAUUUGGAAGUAAGGGUAAUAGAGGGGGUUGGAGGGGUUAUAAUCCUCUACUAUUCAAUUUUAAAUAGUCAGUGAUUCUAGCCCUAUCAAUACCCUUCAUUCCACUUACUCCCAAACAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654031.2	ncRNA:21   CCGAA-CAAACCCUCAUUCACC   1   |||||-|||||||||||||||| targets:1589   GGCUUUGUUUGGGAGUAAGUGG   1610 Target Full Sequence	2.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405950.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4075 from Patent EP2074227	NA	coding protein	psRNATarget
JB166411.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4075 from Patent EP2559767	NA	coding protein	psRNATarget
HI405942.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4067 from Patent EP2074227	NA	coding protein	psRNATarget
JB166403.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4067 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238080.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4075 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238072.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:3   GGCUUGUUUGGGAGCAAGUGG   23 Target Full Sequence	1.5	Sequence 4067 from Patent EP2985353	NA	coding protein	psRNATarget
EZ077632.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:63   GGCUUGUUUGGGAGCAAGUGG   83 Target Full Sequence	1.5	TSA: Zea mays contig13271, mRNA sequence	NA	coding protein	psRNATarget
BT033702.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:955   GGCUUGUUUGGGAGCAAGUGG   975 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137008.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:955   GGCUUGUUUGGGAGCAAGUGG   975 Target Full Sequence	1.5	Zea mays calcineurin B-like protein (CBL1), mRNA	NA	coding protein	psRNATarget
AY104107.2	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:1203   GGCUUGUUUGGGAGCAAGUGG   1223 Target Full Sequence	1.5	Zea mays PCO062189 mRNA sequence	NA	coding protein	psRNATarget
EU968858.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:1062   GGCUUGUUUGGGAGCAAGUGG   1082 Target Full Sequence	1.5	Zea mays clone 324588 mRNA sequence	NA	coding protein	psRNATarget
BT087519.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:1136   GGCUUGUUUGGGAGCAAGUGG   1156 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0100J09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196723.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||| targets:1136   GGCUUGUUUGGGAGCAAGUGG   1156 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502246 (LOC100502246), mRNA	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:4   GGCUUGUUUGGGAGCAAGUGA   24 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:4   GGCUUGUUUGGGAGCAAGUGA   24 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:4   GGCUUGUUUGGGAGCAAGUGA   24 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:957   GGCUUGUUUGGGAGCAAGUGA   977 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:790   GGCUUGUUUGGGAGCAAGUGA   810 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   ||||||||||||||*|||||* targets:790   GGCUUGUUUGGGAGCAAGUGA   810 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552929.1	ncRNA:21   CCGAACAAACCCUCAUUCACC   1   **=|||||||||||*|||||| targets:1029   CCUUUGUUUGGGAGCAAGUGG   1049 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654899 (LOC103654899), mRNA	NA	coding protein	psRNATarget