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BaseInfo

ncRNA ID	novel_zma_miR4400
Species	Zea mays
Class	miRNA
Genome position	Chr7:36807945-36808028 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	21
Mature sequence(if miRNA)	1 - UGGAGGGGAUUAGAGGGGCUA - 21
Stem-loop(if miRNA)	--U          A   GG          AC          A    GGAGGGGAUU GAG  GCUAAAUUUU  UUCUUAUUCA A    |||||||||| |||  ||||||||||  ||||||||||    CCUUCCCUAA CUC  UGAUUUAAAA  AAGAAUAAGU A UGG          C   UU          GA          U
Stem-loop sequence	UGGAGGGGAUUAGAGGGGCUAAAUUUUACUUCUUAUUCAAAAUUGAAUAAGAAAGAAAAUUUAGUUUCUCCAAUCCCUUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166281.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   ||||||||||||||||||||= targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	1.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   ||||||||||||||||||||= targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	1.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   ||||||||||||||||||||= targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	1.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   |||||||||*||||||||||= targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   |||||||||*||||||||||= targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552999.1	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   |**|||||||||||=|||||| targets:1694   UCCCCCCUCUAAUCUCCUCCA   1714 Target Full Sequence	2.5	PREDICTED: Zea mays Sec14p-like phosphatidylinositol transfer family protein (LOC100191363), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   **||||||||||||||||*|= targets:1570   CUGCCCCUCUAAUCCCCUACG   1590 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654930.2	ncRNA:21   AUCGGGGAGAUUAGGGGAGGU   1   ***||||||*||||||||||| targets:79   AUCCCCCUCGAAUCCCCUCCA   99 Target Full Sequence	2.5	PREDICTED: Zea mays abnormal spindle-like microcephaly-associated protein homolog (LOC103633234), mRNA	NA	coding protein	psRNATarget