Search result

BaseInfo

ncRNA ID	novel_zma_miR4398
Species	Zea mays
Class	miRNA
Genome position	Chr7:14390718-14390782 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2089700;SRR2089708
Length	24
Mature sequence(if miRNA)	42 - AUGUAUUGAGGUGGAUUUAGGCGU - 65
Stem-loop(if miRNA)	--           UG    UA  C    C      AUGUAUUGAGG  GAUU  GG GUAA UUAA   |||||||||||  ||||  || |||| |||A   UACGUAACUCC  CUAA  CC CAUU AAUC UG           GU    UA  A    U
Stem-loop sequence	AUGUAUUGAGGUGGAUUUAGGCGUAACUUAAACUAAUUUACACCAUAAUCUGCCUCAAUGCAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941642.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||||||||||||| targets:10   ACACCUCAAUCCACCUCAAUACAU   33 Target Full Sequence	1.0	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||||||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	1.0	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||||||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
BT068947.2	ncRNA:24   UGC-GGAUUUAGGUGGAGUUAUGUA   1   ==|-|||=||||||=|||||||||| targets:176   GUGACCUGAAUCCAUCUCAAUACAU   200 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0013N24 mRNA, complete cds	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*|||||||=||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*|||||||=||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*|||||||=||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||=|||||||||| targets:62   ACACCUCAAUCCAUCUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||=|||||||||| targets:62   ACACCUCAAUCCAUCUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|||*||||||=|||||||||| targets:62   ACACCUCAAUCCAUCUCAAUACAU   85 Target Full Sequence	2.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*||**||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.0	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*||**||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.0	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*||**||||||||||||||||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.0	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ***|||*||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ***|||*||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ***|||*||||||||||||||||* targets:23   UAACCUUAAUCCACCUCAAUACAA   46 Target Full Sequence	2.0	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ***|||*||||||||||||||||* targets:973   UAACCUUAAUCCACCUCAAUACAA   996 Target Full Sequence	2.0	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|=*|||||||||||||*|||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.5	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|=*|||||||||||||*|||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.5	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||*|=*|||||||||||||*|||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.5	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   UGCGGAUUUAGGUGGAGUUAUGUA   1   ||-|||*||||||||||||*|||| targets:153   AC-CCUCAAUCCACCUCAACACAU   175 Target Full Sequence	2.5	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   UGCG----GAUUUAGGUGGAGUUAUGUA   1   |=|=----||*||||||||||||*|||| targets:58   AUGUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   UGCG----GAUUUAGGUGGAGUUAUGUA   1   |=|=----||*||||||||||||*|||| targets:58   AUGUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   UGCG----GAUUUAGGUGGAGUUAUGUA   1   |=|=----||*||||||||||||*|||| targets:58   AUGUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget