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BaseInfo

ncRNA ID novel_zma_miR4397
Species Zea mays
Class miRNA
Genome position Chr7:51922741-51922869 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 106 - UCGGACUGUCCGGUAUGCCAGCGG - 129
Stem-loop(if miRNA) --UC            A       G A  AACG   ---A    -      ----AAC  UCGACUCCA
    GGACUGUCCGGU UGCCAGC G GC    GCU    CUUC GCGCGC       GG         A
    |||||||||||| ||||||| | ||    |||    |||| ||||||       ||         C
    UCUGACAGGCCA GCGGUUG C CG    CGA    GGAG CGCGCG       GC         G
GACA            C       G G  --CA   GACA    A      CGUCCGC  GUAAUUUAC
Stem-loop sequence UCGGACUGUCCGGUAUGCCAGCGGAGCAACGGCUACUUCGCGCGCAACGGUCGACUCCAACGCAUUUAAUGCGCGCCUGCGCGCGCAGAGGACAGAGCACGCGCGGUUGGCGCACCGGACAGUCUACAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT083610.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||||||||*|||||||||||||=
targets:694   CCGCUGGCACACCGGACAGUCCGG   717

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||*|||||*|||||||||||||=
targets:796   CCGGUGGCACACCGGACAGUCCGG   819

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   GGCG-ACCGUAUGGCCUGUCAGGCU   1
  =|||-||||=*|||||||||||||=
targets:471   UCGCAUGGCGCACCGGACAGUCCGG   495

3.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=|||||*|||||||||||||=
targets:721   CCGUUGGCACACCGGACAGUCCGG   744

2.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  =|****|||*|||||||||||||=
targets:740   UCCGGUGCACACCGGACAGUCCGG   763

3.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
LQ241540.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  ||*||||||*|||||||||||||=
targets:9   CCACUGGCACACCGGACAGUCCGG   32

2.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
HI409410.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  ||*||||||*|||||||||||||=
targets:9   CCACUGGCACACCGGACAGUCCGG   32

2.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
JB169871.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  ||*||||||*|||||||||||||=
targets:9   CCACUGGCACACCGGACAGUCCGG   32

2.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
EZ106959.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||*|||||*|||||||||||||=
targets:93   CCGGUGGCACACCGGACAGUCCGG   116

2.0 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  *||=||||=*|||||||||||||=
targets:598   ACGUUGGCGCACCGGACAGUCCGG   621

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:693   CCGUUGGCUCACCGGACAGUCCGG   716

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   GGCG-ACCGUAUGGCCUGUCAGGCU   1
  =|||-||||=*|||||||||||||=
targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  *||=||||=*|||||||||||||=
targets:598   ACGUUGGCGCACCGGACAGUCCGG   621

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:693   CCGUUGGCUCACCGGACAGUCCGG   716

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   GGCG-ACCGUAUGGCCUGUCAGGCU   1
  =|||-||||=*|||||||||||||=
targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
EZ066204.1
ncRNA:24   GGCG-ACCGUAUGGCCUGUCAGGCU   1
  =|||-||||=*|||||||||||||=
targets:87   UCGCAUGGCGCACCGGACAGUCCGG   111

3.0 TSA: Zea mays contig01838, mRNA sequence NA coding protein psRNATarget
BT068112.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:579   CCGUUGGCUCACCGGACAGUCCGG   602

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   GGC-GACCGUAUGGCCUGUCAGGCU   1
  =||-|||||=*|||||||||||||=
targets:372   UCGUCUGGCGCACCGGACAGUCCGG   396

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  =|****|||*|||||||||||||=
targets:598   UCCGGUGCACACCGGACAGUCCGG   621

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  =|****|||*|||||||||||||=
targets:468   UCCGGUGCACACCGGACAGUCCGG   491

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:715   CCGUUGGCUCACCGGACAGUCCGG   738

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   GGC-GACCGUAUGGCCUGUCAGGCU   1
  =||-|*|||=*|||||||||||||=
targets:493   UCGUCGGGCGCACCGGACAGUCCGG   517

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:715   CCGUUGGCUCACCGGACAGUCCGG   738

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   GGC-GACCGUAUGGCCUGUCAGGCU   1
  =||-|*|||=*|||||||||||||=
targets:493   UCGUCGGGCGCACCGGACAGUCCGG   517

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT066461.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:704   CCGUUGGCUCACCGGACAGUCCGG   727

3.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:676   CCGUUGGCUCACCGGACAGUCCGG   699

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   GGC--------GACCGUAUGGCCUGUCAGGCU   1
  |||--------|||||=*|||||||||||||=
targets:570   CCGUUGCAGAUCUGGCGCACCGGACAGUCCGG   601

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  =||--|||=*|||||||||||||=
targets:484   UCG--GGCGCACCGGACAGUCCGG   505

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:676   CCGUUGGCUCACCGGACAGUCCGG   699

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   GGC--------GACCGUAUGGCCUGUCAGGCU   1
  |||--------|||||=*|||||||||||||=
targets:570   CCGUUGCAGAUCUGGCGCACCGGACAGUCCGG   601

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  =||--|||=*|||||||||||||=
targets:484   UCG--GGCGCACCGGACAGUCCGG   505

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:540   CCGUUGGCUCACCGGACAGUCCGG   563

3.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:540   CCGUUGGCUCACCGGACAGUCCGG   563

3.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:388   CCGUUGGCUCACCGGACAGUCCGG   411

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||-|||||*|||||||||||||=
targets:1379   CCG-UGGCACACCGGACAGUCCGG   1401

2.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |||=||||**|||||||||||||=
targets:2748   CCGUUGGCUCACCGGACAGUCCGG   2771

3.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   GGC-GACCGUAUGGCCUGUCAGGCU   1
  =||-|||||=*|||||||||||||=
targets:2536   UCGACUGGCGCACCGGACAGUCCGG   2560

3.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
BT068871.2
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |=|=||||**|||||||||||||=
targets:686   CUGUUGGCUCACCGGACAGUCCGG   709

3.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |=|=||||**|||||||||||||=
targets:686   CUGUUGGCUCACCGGACAGUCCGG   709

3.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
LQ242062.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |=|*||||**|||||||||||||=
targets:28   CUGGUGGCCCACCGGACAGUCCGG   51

3.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
JB170393.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |=|*||||**|||||||||||||=
targets:28   CUGGUGGCCCACCGGACAGUCCGG   51

3.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
HI409932.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  |=|*||||**|||||||||||||=
targets:28   CUGGUGGCCCACCGGACAGUCCGG   51

3.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
BT066013.2
ncRNA:24   GG-CG-ACCGUAUGGCCUGUCAGGCU   1
  ||-||-||||=*|||||||||||||=
targets:775   CCAGCCUGGCGCACCGGACAGUCCGG   800

3.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   GGCG----ACCGUAUGGCCUGUCAGGCU   1
  |=|=----||||=*|||||||||||||=
targets:484   CUGUCGAGUGGCGCACCGGACAGUCCGG   511

3.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   GG-CG-ACCGUAUGGCCUGUCAGGCU   1
  ||-||-||||=*|||||||||||||=
targets:775   CCAGCCUGGCGCACCGGACAGUCCGG   800

3.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   GGCG----ACCGUAUGGCCUGUCAGGCU   1
  |=|=----||||=*|||||||||||||=
targets:484   CUGUCGAGUGGCGCACCGGACAGUCCGG   511

3.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
EZ109126.1
ncRNA:24   GGCGACCGUAUGGCCUGUCAGGCU   1
  ==|*||||=*|||||||||||||=
targets:172   UUGAUGGCGCACCGGACAGUCCGG   195

3.0 TSA: Zea mays contig44785, mRNA sequence NA coding protein psRNATarget
EZ065990.1
ncRNA:20   ACCGUAUGGCCUGUCAGGCU   1
  ||||=*|||||||||||||=
targets:1   UGGCGCACCGGACAGUCCGG   20

3.0 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
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