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BaseInfo

ncRNA ID	novel_zma_miR4391
Species	Zea mays
Class	miRNA
Genome position	Chr7:175153062-175153229 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287162;SRR2287163
Length	24
Mature sequence(if miRNA)	145 - UGGUGCGGCUGAACCGGAUGGCAG - 168
Stem-loop(if miRNA)	--     C        CG A     G                  A                   G    C          ACUA   UGGUG GGCUGAAC  G UGGCA CAUUGGACCAGGGCUUCC CUGGCUAUUGGAAGCCUAG GCUC AAAUAUAUAA    U   ||||| ||||||||  | ||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||   ACCAC CUGACUUG  C ACCGU GUAACCUGGUUCCGAAGG GAUCGAUAACCUUCGGGUC CGAG UUUAUAUAUU    A GG     A        AU C     A                  G                   A    A          AAAU
Stem-loop sequence	UGGUGCGGCUGAACCGGAUGGCAGCAUUGGACCAGGGCUUCCACUGGCUAUUGGAAGCCUAGGGCUCCAAAUAUAUAAACUAUAUAAAUUAUAUAUUUAGAGCACUGGGCUUCCAAUAGCUAGGGGAAGCCUUGGUCCAAUGAUGCCACCUAGUUCAGUCACACCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544200.1	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   *||||||||||||=|||||||||| targets:572   GUGCCAUCCGGUUUAGCCGCACCA   595 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942302 (LOC109942302), mRNA	NA	coding protein	psRNATarget
EZ113111.1	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   =*||*=||*||||||||||||||| targets:178   UCGCGGUCGGGUUCAGCCGCACCA   201 Target Full Sequence	2.0	TSA: Zea mays contig48772, mRNA sequence	NA	coding protein	psRNATarget
AY109318.1	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   =*||*=||*||||||||||||||| targets:734   UCGCGGUCGGGUUCAGCCGCACCA   757 Target Full Sequence	2.0	Zea mays PCO067099 mRNA sequence	NA	coding protein	psRNATarget
NM_001176198.1	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   =*||*=||*||||||||||||||| targets:1475   UCGCGGUCGGGUUCAGCCGCACCA   1498 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383550 (LOC100383550), mRNA	NA	coding protein	psRNATarget
BT067558.1	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   =*||*=||*||||||||||||||| targets:1475   UCGCGGUCGGGUUCAGCCGCACCA   1498 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0089N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660661.2	ncRNA:24   GACGGUAGGCCAAGUCGGCGUGGU   1   =*||*=||*||||||||||||||| targets:3969   UCGCGGUCGGGUUCAGCCGCACCA   3992 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100383550 (LOC100383550), transcript variant X1, mRNA	NA	coding protein	psRNATarget