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BaseInfo

ncRNA ID novel_zma_miR4387
Species Zea mays
Class miRNA
Genome position Chr6:162643361-162643406 [+]
Reference genome RefGen_v4
Source SRR2287161;SRR4237222
Length 21
Mature sequence(if miRNA) 1 - UUUGGAUUGAAUUGGUUGGUG - 21
Stem-loop(if miRNA) --    G    A    -    GU
  UUUG AUUG AUUG GUUG  G
  |||| |||| |||| ||||  U
  AAAU UAAU UAAU CAAC  A
GA    A    A    U    AU
Stem-loop sequence UUUGGAUUGAAUUGGUUGGUGUAUACAACUUAAUAUAAUAUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008678423.2
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  |||=|||||||||||*|||||
targets:536   CACUAACCAAUUCAACCCAAA   556

2.5 PREDICTED: Zea mays putative protein kinase superfamily protein (LOC100194403), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678423.2
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  |||=|||||||||||*|||||
targets:615   CACUAACCAAUUCAACCCAAA   635

2.5 PREDICTED: Zea mays putative protein kinase superfamily protein (LOC100194403), transcript variant X1, mRNA NA coding protein psRNATarget
EZ107374.1
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  =*|||||*|||||||||=|||
targets:115   UCCCAACAAAUUCAAUCUAAA   135

2.5 TSA: Zea mays contig43032, mRNA sequence NA coding protein psRNATarget