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BaseInfo

ncRNA ID novel_zma_miR4379
Species Zea mays
Class miRNA
Genome position Chr6:31113917-31114006 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 67 - GUGGAUUGAGGGGAUUGGAGGGGA - 90
Stem-loop(if miRNA) GU  A   --                   CU           UUAA
  GG UUG  AGGGGAUUGGAGGGGAUUA  UUUUUUUCUAU    A
  || |||  |||||||||||||||||||  |||||||||||
  CC AAC  UCCCCUAAUCUCCUCUAAU  AGGGGAAGAUA    A
-G  -   GU                   UU           UGUU
Stem-loop sequence GUGGAUUGAGGGGAUUGGAGGGGAUUACUUUUUUUUCUAUUUAAAAUUGUAUAGAAGGGGAUUUAAUCUCCUCUAAUCCCCUUGCAACCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552749.1
ncRNA:24   AGGGGAGGUUAGGGG-AGUUAGGUG   1
  |||||||||||||||-|||||||||
targets:3273   UCCCCUCCAAUCCCCCUCAAUCCAC   3297

3.0 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:24   AGGGGAGGUUAGGGG-AGUUAGGUG   1
  |||||||||||||||-|||||||||
targets:1594   UCCCCUCCAAUCCCCCUCAAUCCAC   1618

3.0 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   AGGGGAGGUUAGGGG-AGUUAGGUG   1
  |||||||||||||||-|||||||||
targets:1594   UCCCCUCCAAUCCCCCUCAAUCCAC   1618

3.0 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT042029.1
ncRNA:24   AGGGGAGGUUAGGGGAGUUAGGUG   1
  |=||=||||||=||||||||||||
targets:257   UUCCUUCCAAUUCCCUCAAUCCAC   280

1.5 Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds NA coding protein psRNATarget
XM_008661613.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  |||*||||||||||-||||||||||
targets:3041   UCCACUCCAAUCCCUCUCAAUCCAC   3065

3.0 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  |||*||||||||||-||||||||||
targets:3046   UCCACUCCAAUCCCUCUCAAUCCAC   3070

3.0 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCAC   100

3.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCAC   100

3.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCAC   100

3.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCAC   110

3.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCAC   110

3.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCAC   110

3.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCAC   119

3.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCAC   119

3.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCAC   119

3.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:742   ACCCAUCCAAUCCCACUCAAUCCAC   766

3.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:871   ACCCAUCCAAUCCCACUCAAUCCAC   895

3.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:173   ACCCAUCCAAUCCCACUCAAUCCAC   197

3.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1125   ACCCAUCCAAUCCCGCUCAAUCCAC   1149

3.0 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1125   ACCCAUCCAAUCCCGCUCAAUCCAC   1149

3.0 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:525   ACCCAUCCAAUCCCACUCAAUCCAC   549

3.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1527   ACCCAUCCAAUCCCACUCAAUCCAC   1551

3.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1527   ACCCAUCCAAUCCCACUCAAUCCAC   1551

3.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1616   ACCCAUCCAAUCCCGCUCAAUCCAC   1640

3.0 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1812   ACCCAUCCAAUCCCACUCAAUCCAC   1836

3.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1812   ACCCAUCCAAUCCCACUCAAUCCAC   1836

3.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2044   ACCCAUCCAAUCCCGCUCAAUCCAC   2068

3.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2026   ACCCAUCCAAUCCCGCUCAAUCCAC   2050

3.0 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2137   ACCCAUCCAAUCCCGCUCAAUCCAC   2161

3.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2497   ACCCAUCCAAUCCCACUCAAUCCAC   2521

3.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2797   ACCCAUCCAAUCCCGCUCAAUCCAC   2821

3.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1955   ACCCAUCCAAUCCCACUCAAUCCAC   1979

3.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1955   ACCCAUCCAAUCCCACUCAAUCCAC   1979

3.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:2901   ACCCAUCCAAUCCCGCUCAAUCCAC   2925

3.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1078   ACCCAUCCAAUCCCACUCAAUCCAC   1102

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1196   ACCCAUCCAAUCCCACUCAAUCCAC   1220

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1196   ACCCAUCCAAUCCCACUCAAUCCAC   1220

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:1226   ACCCAUCCAAUCCCACUCAAUCCAC   1250

3.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|||*|||||||||-||||||||||
targets:5801   ACCCAUCCAAUCCCACUCAAUCCAC   5825

3.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|=|*|||||||||-||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCAC   101

3.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|=|*|||||||||-||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCAC   101

3.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|=|*|||||||||-||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCAC   101

3.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|=|*|||||||||-||||||||||
targets:117   ACUCAUCCAAUCCCACUCAAUCCAC   141

3.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *|=|*|||||||||-||||||||||
targets:2208   ACUCAUCCAAUCCCACUCAAUCCAC   2232

3.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   AGGGGAGGUUAGGG-GAGUUAGGUG   1
  *||=*|||||||||-||||||||||
targets:57   ACCUAUCCAAUCCCGCUCAAUCCAC   81

3.0 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
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