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BaseInfo

ncRNA ID novel_zma_miR4378
Species Zea mays
Class miRNA
Genome position Chr9:1974805-1974856 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 21
Mature sequence(if miRNA) 1 - CCUCCAAUCCCCUCAAUCCAC - 21
Stem-loop(if miRNA) --     CA                 
  GGAUU  GGGGGAUUGGAGGGGAUU
  |||||  |||||||||||||||||U
  CCUAA  UCCCCUAACCUCCCCUAA
CA     -C                 
Stem-loop sequence GGAUUCAGGGGGAUUGGAGGGGAUUUAAUCCCCUCCAAUCCCCUCAAUCCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT054737.1
ncRNA:21   CACCUAACUCC-CCUAACCUCC   1
  |||||||||||-||||||||||
targets:124   GUGGAUUGAGGAGGAUUGGAGG   145

3.0 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |||||||||-||||||||||||
targets:1274   GUGGAUUGAAGGGGAUUGGAGG   1295

3.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_020546234.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X16, mRNA NA coding protein psRNATarget
NM_001346667.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1301   GCGGAUUGAAGGGGAUUGGAGG   1322

3.0 Zea mays uncharacterized LOC103640607 (LOC103640607), mRNA NA coding protein psRNATarget
XM_008663930.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X15, mRNA NA coding protein psRNATarget
XM_008663920.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020546233.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008663904.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020546239.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1665   GCGGAUUGAAGGGGAUUGGAGG   1686

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X26, mRNA NA coding protein psRNATarget
XM_008663929.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008663884.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008663923.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X12, mRNA NA coding protein psRNATarget
XM_008663892.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008663900.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008663873.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546243.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1608   GCGGAUUGAAGGGGAUUGGAGG   1629

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X31, mRNA NA coding protein psRNATarget
XM_008663889.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008663868.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008663880.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008663877.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008663952.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1440   GCGGAUUGAAGGGGAUUGGAGG   1461

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X21, mRNA NA coding protein psRNATarget
XM_008663934.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1491   GCGGAUUGAAGGGGAUUGGAGG   1512

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X17, mRNA NA coding protein psRNATarget
XM_008663862.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1496   GCGGAUUGAAGGGGAUUGGAGG   1517

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546248.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1603   GCGGAUUGAAGGGGAUUGGAGG   1624

3.0 PREDICTED: Zea mays uncharacterized LOC103640607 (LOC103640607), transcript variant X35, mRNA NA coding protein psRNATarget
XM_008677115.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1456   GCGGAUUGAAGGGGAUUGGAGG   1477

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550536.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1570   GCGGAUUGAAGGGGAUUGGAGG   1591

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008677112.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1602   GCGGAUUGAAGGGGAUUGGAGG   1623

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008677111.2
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1607   GCGGAUUGAAGGGGAUUGGAGG   1628

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550538.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1501   GCGGAUUGAAGGGGAUUGGAGG   1522

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020550539.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:2328   GCGGAUUGAAGGGGAUUGGAGG   2349

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020550537.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1501   GCGGAUUGAAGGGGAUUGGAGG   1522

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550533.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:1607   GCGGAUUGAAGGGGAUUGGAGG   1628

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550543.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:2186   GCGGAUUGAAGGGGAUUGGAGG   2207

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020550542.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:2328   GCGGAUUGAAGGGGAUUGGAGG   2349

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020550541.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:2328   GCGGAUUGAAGGGGAUUGGAGG   2349

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020550540.1
ncRNA:21   CACCUAACU-CCCCUAACCUCC   1
  |*|||||||-||||||||||||
targets:2932   GCGGAUUGAAGGGGAUUGGAGG   2953

3.0 PREDICTED: Zea mays hypothetical protein (LOC103651476), transcript variant X12, mRNA NA coding protein psRNATarget
EU974533.1
ncRNA:21   CACCU-AACUCCCCUAACCUCC   1
  *||||-|||||||||||||||*
targets:1084   CUGGAGUUGAGGGGAUUGGAGA   1105

3.0 Zea mays clone 451866 DNA polymerase I mRNA, complete cds NA coding protein psRNATarget
BT037429.1
ncRNA:21   CACCU-AACUCCCCUAACCUCC   1
  *||||-|||||||||||||||*
targets:1088   CUGGAGUUGAGGGGAUUGGAGA   1109

3.0 Zea mays full-length cDNA clone ZM_BFb0168P07 mRNA, complete cds NA coding protein psRNATarget
EU972625.1
ncRNA:21   CACCU-AACUCCCCUAACCUCC   1
  *||||-|||||||||||||||*
targets:1009   CUGGAGUUGAGGGGAUUGGAGA   1030

3.0 Zea mays clone 384672 DNA polymerase I mRNA, complete cds NA coding protein psRNATarget
NM_001158408.1
ncRNA:21   CACCU-AACUCCCCUAACCUCC   1
  *||||-|||||||||||||||*
targets:1009   CUGGAGUUGAGGGGAUUGGAGA   1030

3.0 Zea mays DNA polymerase I (LOC100285516), mRNA NA coding protein psRNATarget
XM_008660501.2
ncRNA:21   CACCU-AACUCCCCUAACCUCC   1
  *||||-|||||||||||||||*
targets:1066   CUGGAGUUGAGGGGAUUGGAGA   1087

3.0 PREDICTED: Zea mays DNA polymerase I (LOC100285516), transcript variant X1, mRNA NA coding protein psRNATarget
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