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BaseInfo

ncRNA ID novel_zma_miR4369
Species Zea mays
Class miRNA
Genome position Chr9:19291743-19291828 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR4237221;SRR4237225;SRR5099742;SRR5100255;SRR5105963
Length 24
Mature sequence(if miRNA) 1 - AUAUUCGAGAACGGAGGUAGUAUC - 24
Stem-loop(if miRNA) --    C           UUU          GGU      AAA
  UAUU CCUCCGUUCUU   UAUUUGUCGC   UUAGUU   A
  |||| |||||||||||   ||||||||||   ||||||
  AUGA GGAGGCAAGAG   AUAGACAGCG   GAUCAA   A
CU    U           CUU          GGC      GUA
Stem-loop sequence UAUUCCCUCCGUUCUUUUUUAUUUGUCGCGGUUUAGUUAAAAAAUGAACUAGCGGGCGACAGAUAUUCGAGAACGGAGGUAGUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061281.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ||||||=|||||||||||||||||
targets:1369   GAUACUGCCUCCGUUCUCGAAUAU   1392

1.0 Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds NA coding protein psRNATarget
XM_020545142.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||||||||||||||||
targets:380   UAUACUACCUCCGUUCUCGAAUAU   403

0.0 PREDICTED: Zea mays uncharacterized LOC100382526 (LOC100382526), transcript variant X3, mRNA NA coding protein psRNATarget
EZ082762.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:4   UGUACUACCUCCGUUCUCGAAUAU   27

0.0 TSA: Zea mays contig18405, mRNA sequence NA coding protein psRNATarget
EZ071175.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||||||||||=||||||
targets:91   UAUACUACCUCCGUUCUUGAAUAU   114

1.5 TSA: Zea mays contig06812, mRNA sequence NA coding protein psRNATarget
EZ053711.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||=|||||||||||||
targets:97   UAUACUACCUUCGUUCUCGAAUAU   120

1.0 TSA: Zea mays contig54833, mRNA sequence NA coding protein psRNATarget
LQ242205.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8200 from Patent EP2985353 NA coding protein psRNATarget
LQ242043.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8038 from Patent EP2985353 NA coding protein psRNATarget
HI409913.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8038 from Patent EP2074227 NA coding protein psRNATarget
JB170536.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8200 from Patent EP2559767 NA coding protein psRNATarget
JB170374.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8038 from Patent EP2559767 NA coding protein psRNATarget
HI410075.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAU   205

0.0 Sequence 8200 from Patent EP2074227 NA coding protein psRNATarget
EZ110367.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:419   UGUACUACCUCCGUUCUCGAAUAU   442

0.0 TSA: Zea mays contig46027, mRNA sequence NA coding protein psRNATarget
EU945472.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:427   UGUACUACCUCCGUUCUCGAAUAU   450

0.0 Zea mays clone 274397 mRNA sequence NA coding protein psRNATarget
XM_020537813.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:863   UGUACUACCUCCGUUCUCGAAUAU   886

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020537812.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:917   UGUACUACCUCCGUUCUCGAAUAU   940

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020537811.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:969   UGUACUACCUCCGUUCUCGAAUAU   992

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA NA coding protein psRNATarget
EU962019.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:1017   UGUACUACCUCCGUUCUCGAAUAU   1040

0.0 Zea mays clone 239644 mRNA sequence NA coding protein psRNATarget
XM_020537810.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:1022   UGUACUACCUCCGUUCUCGAAUAU   1045

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA NA coding protein psRNATarget
BT017193.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:950   UGUACUACCUCCGUUCUCGAAUAU   973

0.0 Zea mays clone EL01N0371C09.c mRNA sequence NA coding protein psRNATarget
EU965353.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:1018   UGUACUACCUCCGUUCUCGAAUAU   1041

0.0 Zea mays clone 285514 CAPIP1 mRNA, complete cds NA coding protein psRNATarget
BT040068.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:913   UGUACUACCUCCGUUCUCGAAUAU   936

0.0 Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds NA coding protein psRNATarget
NM_001147497.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:913   UGUACUACCUCCGUUCUCGAAUAU   936

0.0 Zea mays CAPIP1 (LOC100273048), mRNA NA coding protein psRNATarget
EU960779.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:1304   UGUACUACCUCCGUUCUCGAAUAU   1327

0.0 Zea mays clone 228509 mRNA sequence NA coding protein psRNATarget
XM_008665300.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||=|||||||||||||
targets:2067   UAUACUACCUUCGUUCUCGAAUAU   2090

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008665299.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||=|||||||||||||
targets:2079   UAUACUACCUUCGUUCUCGAAUAU   2102

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008665301.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||=|||||||||||||
targets:2132   UAUACUACCUUCGUUCUCGAAUAU   2155

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545884.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||=|||||||||||||||
targets:3506   UAUACUACUUCCGUUCUCGAAUAU   3529

1.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA NA coding protein psRNATarget
XM_008658418.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||||||||||||||||
targets:4920   AGUACUACCUCCGUUCUCGAAUAU   4943

0.0 PREDICTED: Zea mays ABC transporter G family member 36 (LOC103636060), mRNA NA coding protein psRNATarget
BT060531.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ||||||||||||||||||*|||||
targets:409   GAUACUACCUCCGUUCUCAAAUAU   432

1.5 Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds NA coding protein psRNATarget
EZ050211.1
ncRNA:24   CUAUGAU-GGAGGCAAGAGCUUAUA   1
  |=|||||-|||||||||||||||||
targets:31   GGUACUAACCUCCGUUCUCGAAUAU   55

2.0 TSA: Zea mays contig51330, mRNA sequence NA coding protein psRNATarget
EU975574.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  **||||||||||||||||||||||
targets:28   UCUACUACCUCCGUUCUCGAAUAU   51

0.0 Zea mays clone 492870 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU950207.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||||||||
targets:28   GAGCUACUAUCUCCGUUCUCGAAUAU   53

1.0 Zea mays clone 469419 mRNA sequence NA coding protein psRNATarget
EU946581.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||||||||||||=||||||
targets:186   UGUACUACCUCCGUUCUUGAAUAU   209

1.5 Zea mays clone 317675 mRNA sequence NA coding protein psRNATarget
BT083888.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||=|||||||||||||
targets:1102   UGUACUACCUUCGUUCUCGAAUAU   1125

1.0 Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds NA coding protein psRNATarget
NM_001177150.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||=|||||||||||||
targets:1253   UGUACUACCUUCGUUCUCGAAUAU   1276

1.0 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
NM_001148677.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||=|||||||||||||
targets:1270   UGUACUACCUUCGUUCUCGAAUAU   1293

1.0 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
BT042757.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||||=|||||||||||||
targets:1270   UGUACUACCUUCGUUCUCGAAUAU   1293

1.0 Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds NA coding protein psRNATarget
XM_008676081.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=|||||||||||||||||||
targets:2486   UGUAUUACCUCCGUUCUCGAAUAU   2509

0.0 PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676082.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=|||||||||||||||||||
targets:2490   UGUAUUACCUCCGUUCUCGAAUAU   2513

0.0 PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA NA coding protein psRNATarget
EU940900.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||=||||||||||||*
targets:1233   UAUACUACCUUCGUUCUCGAAUAA   1256

2.0 Zea mays clone 1168188 mRNA sequence NA coding protein psRNATarget
EZ084539.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||||||||||*|||||
targets:15   AAUACUACCUCCGUUCUCAAAUAU   38

1.5 TSA: Zea mays contig20183, mRNA sequence NA coding protein psRNATarget
EZ091447.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||*|||||||||||||||||||
targets:61   CAUAAUACCUCCGUUCUCGAAUAU   84

0.0 TSA: Zea mays contig27095, mRNA sequence NA coding protein psRNATarget
NM_001151933.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||*|||||||||||||||
targets:91   UAUACUACAUCCGUUCUCGAAUAU   114

1.0 Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA NA coding protein psRNATarget
EU975204.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||*|||||||||||||||
targets:91   UAUACUACAUCCGUUCUCGAAUAU   114

1.0 Zea mays clone 484326 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU940941.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||=|||=|||||||||||||
targets:1725   AGUACUGCCUUCGUUCUCGAAUAU   1748

2.0 Zea mays clone 1218400 mRNA sequence NA coding protein psRNATarget
AY104299.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||||||||||||||*|||||
targets:1265   UAUACUACCUCCGUUCUCAAAUAU   1288

1.5 Zea mays PCO075569 mRNA sequence NA coding protein psRNATarget
EU954561.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||=|||=|||||||||||||
targets:2152   AGUACUGCCUUCGUUCUCGAAUAU   2175

2.0 Zea mays clone 1470172 regulatory subunit mRNA, complete cds NA coding protein psRNATarget
NM_001153830.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||=|||=|||||||||||||
targets:2152   AGUACUGCCUUCGUUCUCGAAUAU   2175

2.0 Zea mays regulatory subunit (LOC100280910), mRNA NA coding protein psRNATarget
XM_008645362.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||=|||=|||||||||||||
targets:2223   AGUACUGCCUUCGUUCUCGAAUAU   2246

2.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645361.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||=|||=|||||||||||||
targets:2241   AGUACUGCCUUCGUUCUCGAAUAU   2264

2.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546478.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||*||||||||||||||
targets:2916   AAUACUACCCCCGUUCUCGAAUAU   2939

1.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546479.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||*||||||||||||||
targets:2916   AAUACUACCCCCGUUCUCGAAUAU   2939

1.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA NA coding protein psRNATarget
M73828.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  **||=||||||||||=||||||||
targets:572   ACUAUUACCUCCGUUUUCGAAUAU   595

1.5 Maize ferredoxin (Fd) isoprotein mRNA, pFD5 NA coding protein psRNATarget
NM_001165424.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||||||=|||||||||||*
targets:1599   UGUACUACCUCUGUUCUCGAAUAG   1622

2.5 Zea mays uncharacterized LOC100303788 (LOC100303788), mRNA NA coding protein psRNATarget
BT038203.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||||||=|||||||||||*
targets:1599   UGUACUACCUCUGUUCUCGAAUAG   1622

2.5 Zea mays full-length cDNA clone ZM_BFb0217A17 mRNA, complete cds NA coding protein psRNATarget
XM_008660527.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||||||=|||||||||||*
targets:1658   UGUACUACCUCUGUUCUCGAAUAG   1681

2.5 PREDICTED: Zea mays uncharacterized LOC100303788 (LOC100303788), transcript variant X1, mRNA NA coding protein psRNATarget
EZ077311.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||||*||||||||||||||
targets:109   UGUACUACCCCCGUUCUCGAAUAU   132

1.0 TSA: Zea mays contig12948, mRNA sequence NA coding protein psRNATarget
EU949554.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:396   UGUAUUAUCUCCGUUUUCGAAUAU   419

2.5 Zea mays clone 424261 mRNA sequence NA coding protein psRNATarget
EU950930.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*||||||||||||||||||
targets:339   AGUACAACCUCCGUUCUCGAAUAU   362

1.0 Zea mays clone 660705 mRNA sequence NA coding protein psRNATarget
EZ113277.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:576   UGUAUUAUCUCCGUUUUCGAAUAU   599

2.5 TSA: Zea mays contig48938, mRNA sequence NA coding protein psRNATarget
AY109049.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:449   UGUAUUAUCUCCGUUUUCGAAUAU   472

2.5 Zea mays PCO094720 mRNA sequence NA coding protein psRNATarget
BT060610.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||*|||||||=||||||
targets:1325   UAUACUACCGCCGUUCUUGAAUAU   1348

2.5 Zea mays full-length cDNA clone ZM_BFb0024C16 mRNA, complete cds NA coding protein psRNATarget
BT042256.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||||||*|||||||||||||||
targets:843   AGUACUACAUCCGUUCUCGAAUAU   866

1.0 Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds NA coding protein psRNATarget
BT068579.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1438   UGUAUUAUCUCCGUUUUCGAAUAU   1461

2.5 Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds NA coding protein psRNATarget
BT065511.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*||||||||||||||||||
targets:1538   AGUACAACCUCCGUUCUCGAAUAU   1561

1.0 Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds NA coding protein psRNATarget
NM_001175535.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*||||||||||||||||||
targets:1538   AGUACAACCUCCGUUCUCGAAUAU   1561

1.0 Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA NA coding protein psRNATarget
BT034355.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1535   UGUAUUAUCUCCGUUUUCGAAUAU   1558

2.5 Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds NA coding protein psRNATarget
NM_001347903.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1602   UGUAUUAUCUCCGUUUUCGAAUAU   1625

2.5 Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA NA coding protein psRNATarget
BT068416.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1602   UGUAUUAUCUCCGUUUUCGAAUAU   1625

2.5 Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds NA coding protein psRNATarget
XM_008652607.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1646   UGUAUUAUCUCCGUUUUCGAAUAU   1669

2.5 PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA NA coding protein psRNATarget
BT061377.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1689   UGUAUUAUCUCCGUUUUCGAAUAU   1712

2.5 Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds NA coding protein psRNATarget
XM_020540634.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*||||||||||||||||||
targets:1641   AGUACAACCUCCGUUCUCGAAUAU   1664

1.0 PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA NA coding protein psRNATarget
BT087620.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=|||||||=||||||||
targets:1963   UGUAUUAUCUCCGUUUUCGAAUAU   1986

2.5 Zea mays full-length cDNA clone ZM_BFb0134K18 mRNA, complete cds NA coding protein psRNATarget
XM_008666912.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||||=*||||||||||||||||
targets:1755   UAUACUGACUCCGUUCUCGAAUAU   1778

2.0 PREDICTED: Zea mays LOB domain-containing protein 36 (LOC103643737), mRNA NA coding protein psRNATarget
XM_008660842.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||=||||||||||*|||||
targets:3016   AAUACUAUCUCCGUUCUCAAAUAU   3039

2.5 PREDICTED: Zea mays hypothetical protein (LOC103637791), mRNA NA coding protein psRNATarget
XM_020538407.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||*|||||||=||||||
targets:5889   UAUACUACCGCCGUUCUUGAAUAU   5912

2.5 PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646910.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||||*|||||||=||||||
targets:5912   UAUACUACCGCCGUUCUUGAAUAU   5935

2.5 PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X2, mRNA NA coding protein psRNATarget
BT041303.1
ncRNA:24   CUA--UGAUGGAGGCAAGAGCUUAUA   1
  |=|--|=||=|||=||||||||||||
targets:390   GGUUCAUUAUCUCUGUUCUCGAAUAU   415

2.5 Zea mays full-length cDNA clone ZM_BFb0333C18 mRNA, complete cds NA coding protein psRNATarget
NM_001156819.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||=|||=|||*|||||||||||
targets:795   AAUAUUACUUCCCUUCUCGAAUAU   818

2.5 Zea mays SWIB/MDM2 domain superfamily protein (pco097858), mRNA NA coding protein psRNATarget
EU966414.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|||=|||=|||*|||||||||||
targets:795   AAUAUUACUUCCCUUCUCGAAUAU   818

2.5 Zea mays clone 294304 SWIb domain-containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001157753.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1513   GAGCUACUAUCUCCGUUCUCAAAUAU   1538

2.5 Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA NA coding protein psRNATarget
EU969922.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1513   GAGCUACUAUCUCCGUUCUCAAAUAU   1538

2.5 Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds NA coding protein psRNATarget
NM_001165727.1
ncRNA:24   CUA--UGAUGGAGGCAAGAGCUUAUA   1
  |=|--|=||=|||=||||||||||||
targets:1722   GGUUCAUUAUCUCUGUUCUCGAAUAU   1747

2.5 Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), mRNA NA coding protein psRNATarget
BT060682.1
ncRNA:24   CUA--UGAUGGAGGCAAGAGCUUAUA   1
  |=|--|=||=|||=||||||||||||
targets:1722   GGUUCAUUAUCUCUGUUCUCGAAUAU   1747

2.5 Zea mays full-length cDNA clone ZM_BFb0033M07 mRNA, complete cds NA coding protein psRNATarget
XM_008674820.2
ncRNA:24   CUA--UGAUGGAGGCAAGAGCUUAUA   1
  |=|--|=||=|||=||||||||||||
targets:1795   GGUUCAUUAUCUCUGUUCUCGAAUAU   1820

2.5 PREDICTED: Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680960.2
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1893   GAGCUACUAUCUCCGUUCUCAAAUAU   1918

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680966.2
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1881   GAGCUACUAUCUCCGUUCUCAAAUAU   1906

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA NA coding protein psRNATarget
BT086185.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1881   GAGCUACUAUCUCCGUUCUCAAAUAU   1906

2.5 Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds NA coding protein psRNATarget
XM_008680954.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1892   GAGCUACUAUCUCCGUUCUCAAAUAU   1917

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680972.1
ncRNA:24   CU--AUGAUGGAGGCAAGAGCUUAUA   1
  ||--|||||=||||||||||*|||||
targets:1940   GAGCUACUAUCUCCGUUCUCAAAUAU   1965

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA NA coding protein psRNATarget
EU952914.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ***||||=||=|||||||||||||
targets:973   UUAACUAUCUUCGUUCUCGAAUAU   996

2.0 Zea mays clone 1357151 mRNA sequence NA coding protein psRNATarget
NM_001352895.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ***||||=||=|||||||||||||
targets:1566   UUAACUAUCUUCGUUCUCGAAUAU   1589

2.0 Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA NA coding protein psRNATarget
EZ104892.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  **||||||||=|*|||||||||||
targets:46   UCUACUACCUUCAUUCUCGAAUAU   69

2.5 TSA: Zea mays contig40549, mRNA sequence NA coding protein psRNATarget
EZ049723.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  **||||||*|=|||||||||||||
targets:45   AUUACUACAUUCGUUCUCGAAUAU   68

2.0 TSA: Zea mays contig50841, mRNA sequence NA coding protein psRNATarget
EZ113291.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||*||||||*|||||||||||
targets:80   AAUACAACCUCCCUUCUCGAAUAU   103

2.5 TSA: Zea mays contig48952, mRNA sequence NA coding protein psRNATarget
EU968685.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*|=||=|||||||||||||
targets:432   UGUACCAUCUUCGUUCUCGAAUAU   455

3.0 Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
EU963041.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*|=||=|||||||||||||
targets:420   UGUACCAUCUUCGUUCUCGAAUAU   443

3.0 Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
XM_008675718.2
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *||||||*|||||||*||||||||
targets:1124   UAUACUAACUCCGUUAUCGAAUAU   1147

2.5 PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA NA coding protein psRNATarget
NM_001157392.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*|=||=|||||||||||||
targets:1242   UGUACCAUCUUCGUUCUCGAAUAU   1265

3.0 Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA NA coding protein psRNATarget
EU968577.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||*|=||=|||||||||||||
targets:1242   UGUACCAUCUUCGUUCUCGAAUAU   1265

3.0 Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
AY109416.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=||=||=||||*|||||||||||
targets:2444   AGUAUUAUCUCCAUUCUCGAAUAU   2467

2.5 Zea mays CL694_1 mRNA sequence NA coding protein psRNATarget
EZ054003.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  |*|=|||*|||=||||||||||||
targets:88   GCUGCUAACUCUGUUCUCGAAUAU   111

2.5 TSA: Zea mays contig55125, mRNA sequence NA coding protein psRNATarget
EU970775.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ||||-|||=*||||||||||||||
targets:2248   GAUA-UACUCCCGUUCUCGAAUAU   2270

2.0 Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds NA coding protein psRNATarget
NM_001157971.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  ||||-|||=*||||||||||||||
targets:2248   GAUA-UACUCCCGUUCUCGAAUAU   2270

2.0 Zea mays zeaxanthin epoxidase (LOC100285076), mRNA NA coding protein psRNATarget
EZ091721.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *=|||||*||||*|||||||||||
targets:53   UGUACUAACUCCAUUCUCGAAUAU   76

2.5 TSA: Zea mays contig27370, mRNA sequence NA coding protein psRNATarget
EZ113652.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|*||||=|||||*||||||||||
targets:424   CACACUAUCUCCGAUCUCGAAUAU   447

2.5 TSA: Zea mays contig49313, mRNA sequence NA coding protein psRNATarget
EU959115.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|*||||=|||||*||||||||||
targets:823   CACACUAUCUCCGAUCUCGAAUAU   846

2.5 Zea mays clone 210460 mRNA sequence NA coding protein psRNATarget
BT037424.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|*||||=|||||*||||||||||
targets:917   CACACUAUCUCCGAUCUCGAAUAU   940

2.5 Zea mays full-length cDNA clone ZM_BFb0168N02 mRNA, complete cds NA coding protein psRNATarget
NM_001150447.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|*||||=|||||*||||||||||
targets:899   CACACUAUCUCCGAUCUCGAAUAU   922

2.5 Zea mays uncharacterized LOC100276729 (LOC100276729), mRNA NA coding protein psRNATarget
EU964290.1
ncRNA:24   CUAUGAUGGAGGCAAGAGCUUAUA   1
  *|*||||=|||||*||||||||||
targets:899   CACACUAUCUCCGAUCUCGAAUAU   922

2.5 Zea mays clone 277675 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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