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BaseInfo

ncRNA ID novel_zma_miR4364
Species Zea mays
Class miRNA
Genome position Chr5:72080549-72080710 [+]
Reference genome RefGen_v4
Source SRR2287161
Length 21
Mature sequence(if miRNA) 142 - UAAUCCAGCUUAUAUAAUCUA - 162
Stem-loop(if miRNA) --                     A       AUAGAAAA               A   -CC                   GUAGUA
  GAUUAUAUAAGUUGGGUUAUG UGGAAGG        GUAAAAUAUCACUUU GGA   AUAAAUAAGCUGAAAUAAG      U
  ||||||||||||||||||||| |||||||        ||||||||||||||| |||   |||||||||||||||||||
  CUAAUAUAUUCGACCUAAUAC AUCUUCC        CAUUUUAUAGUGAAA CCU   UGUUUAUUCGACUUUAUUC      U
AU                     C       --------               -   UAA                   AGUAAG
Stem-loop sequence GAUUAUAUAAGUUGGGUUAUGAUGGAAGGAUAGAAAAGUAAAAUAUCACUUUAGGACCAUAAAUAAGCUGAAAUAAGGUAGUAUUGAAUGACUUAUUUCAGCUUAUUUGUAAUUCCAAAGUGAUAUUUUACCCUUCUACCAUAAUCCAGCUUAUAUAAUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU956753.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |||||||||||||=|||||||
targets:2305   UAGAUUAUAUAAGUUGGAUUA   2325

1.5 Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds NA coding protein psRNATarget
NM_001319711.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |||||||||||||=|||||||
targets:2305   UAGAUUAUAUAAGUUGGAUUA   2325

1.5 Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA NA coding protein psRNATarget
NM_001174540.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||=||||||||||
targets:1913   UAGAUUAUAUGAGCUGGAUUA   1933

1.5 Zea mays putative sphingolipid transporter spinster homolog 2 (LOC100381734), mRNA NA coding protein psRNATarget
BT062131.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||=||||||||||
targets:1913   UAGAUUAUAUGAGCUGGAUUA   1933

1.5 Zea mays full-length cDNA clone ZM_BFb0217D24 mRNA, complete cds NA coding protein psRNATarget
BT087535.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |||||||||||||=|||||||
targets:56   UAGAUUAUAUAAGUUGGAUUA   76

1.5 Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds NA coding protein psRNATarget
EU948770.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||=||||||||||
targets:683   UAGAUUAUAUGAGCUGGAUUA   703

1.5 Zea mays clone 384422 mRNA sequence NA coding protein psRNATarget
XM_020541956.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |||||||||||||=|||||||
targets:520   UAGAUUAUAUAAGUUGGAUUA   540

1.5 PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA NA coding protein psRNATarget
AY107822.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||=||||||||||
targets:168   UAGAUUAUAUGAGCUGGAUUA   188

1.5 Zea mays PCO087182 mRNA sequence NA coding protein psRNATarget
XM_008660268.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||||||*||||
targets:2926   UAGAUUAUAUAAGCUGAAUUA   2946

1.5 PREDICTED: Zea mays WW domain-containing protein (LOC100279861), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676585.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||*||||||||
targets:1851   UAGAUUAUAUAAUCUGGAUUA   1871

1.5 PREDICTED: Zea mays GABA transporter 1 (LOC103650987), mRNA NA coding protein psRNATarget
XM_008661569.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||*||||||||
targets:1748   UAGAUUAUAUAAUCUGGAUUA   1768

1.5 PREDICTED: Zea mays premnaspirodiene oxygenase (LOC103638736), mRNA NA coding protein psRNATarget
BT043160.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||*||||||||
targets:1203   UAGAUUAUAUAAUCUGGAUUA   1223

1.5 Zea mays full-length cDNA clone ZM_BFc0114D22 mRNA, complete cds NA coding protein psRNATarget
NM_001148840.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||*||||||||
targets:1203   UAGAUUAUAUAAUCUGGAUUA   1223

1.5 Zea mays uncharacterized LOC100274481 (LOC100274481), mRNA NA coding protein psRNATarget
EU940702.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||||||||||||*||||||||
targets:732   UAGAUUAUAUAAUCUGGAUUA   752

1.5 Zea mays clone 1000262 mRNA sequence NA coding protein psRNATarget
XM_008680312.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:3184   UGGAUUAUAUAAUCUGGAUUA   3204

1.5 PREDICTED: Zea mays phosphatidylinositol 3-kinase, root isoform (LOC103653397), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680312.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  *=||||||||||*||||||||
targets:3212   AGGAUUAUAUAAUCUGGAUUA   3232

1.5 PREDICTED: Zea mays phosphatidylinositol 3-kinase, root isoform (LOC103653397), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680313.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:3085   UGGAUUAUAUAAUCUGGAUUA   3105

1.5 PREDICTED: Zea mays phosphatidylinositol 3-kinase, root isoform (LOC103653397), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680313.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  *=||||||||||*||||||||
targets:3113   AGGAUUAUAUAAUCUGGAUUA   3133

1.5 PREDICTED: Zea mays phosphatidylinositol 3-kinase, root isoform (LOC103653397), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651170.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:1758   UGGAUUAUAUAAUCUGGAUUA   1778

1.5 PREDICTED: Zea mays UDP-glycosyltransferase 73E1 (LOC103630075), mRNA NA coding protein psRNATarget
BT054221.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*||||||||||=|||||||
targets:870   UAAAUUAUAUAAGUUGGAUUA   890

2.5 Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds NA coding protein psRNATarget
NM_001152434.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*||||||||||=|||||||
targets:870   UAAAUUAUAUAAGUUGGAUUA   890

2.5 Zea mays FIP1 (LOC100279424), mRNA NA coding protein psRNATarget
EU965980.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:726   UGGAUUAUAUAAUCUGGAUUA   746

1.5 Zea mays clone 290544 mRNA sequence NA coding protein psRNATarget
EU942082.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:190   UGGAUUAUAUAAUCUGGAUUA   210

1.5 Zea mays clone 1475479 mRNA sequence NA coding protein psRNATarget
EU942082.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:213   UGGAUUAUAUAAUCUGGAUUA   233

1.5 Zea mays clone 1475479 mRNA sequence NA coding protein psRNATarget
EU942082.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  *=||||||||||*||||||||
targets:241   AGGAUUAUAUAAUCUGGAUUA   261

1.5 Zea mays clone 1475479 mRNA sequence NA coding protein psRNATarget
EZ052047.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  |=||||||||||*||||||||
targets:89   UGGAUUAUAUAAUCUGGAUUA   109

1.5 TSA: Zea mays contig53167, mRNA sequence NA coding protein psRNATarget
BT085555.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  *|||||||||||*||||||||
targets:1692   CAGAUUAUAUAAUCUGGAUUA   1712

1.5 Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds NA coding protein psRNATarget
XM_008664497.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  *=||||||||||*||||||||
targets:1451   CGGAUUAUAUAAUCUGGAUUA   1471

1.5 PREDICTED: Zea mays F-box protein SKIP19 (LOC103641127), mRNA NA coding protein psRNATarget
XM_008662509.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:2438   UAAAUUAUAUAAUCUGGAUUA   2458

2.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IX.1 (LOC103639802), mRNA NA coding protein psRNATarget
XM_008662240.2
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:2056   UACAUUAUAUAAUCUGGAUUA   2076

2.5 PREDICTED: Zea mays probable Xaa-Pro aminopeptidase 3 (LOC103639488), mRNA NA coding protein psRNATarget
BT064050.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:1515   UAAAUUAUAUAAACUGGAUUA   1535

2.5 Zea mays full-length cDNA clone ZM_BFc0133O08 mRNA, complete cds NA coding protein psRNATarget
BT037552.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:1077   UAAAUUAUAUAAACUGGAUUA   1097

2.5 Zea mays full-length cDNA clone ZM_BFb0179C04 mRNA, complete cds NA coding protein psRNATarget
BT037545.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:976   UAAAUUAUAUAAACUGGAUUA   996

2.5 Zea mays full-length cDNA clone ZM_BFb0178M07 mRNA, complete cds NA coding protein psRNATarget
NM_001350229.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:976   UAAAUUAUAUAAACUGGAUUA   996

2.5 Zea mays haloacid dehalogenase (HAD) superfamily protein (LOC100216900), mRNA NA coding protein psRNATarget
EU963793.1
ncRNA:21   AUCUAAUAUAUUCGACCUAAU   1
  ||*|||||||||*||||||||
targets:997   UAAAUUAUAUAAACUGGAUUA   1017

2.5 Zea mays clone 272711 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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