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BaseInfo

ncRNA ID	novel_zma_miR4363
Species	Zea mays
Class	miRNA
Genome position	Chr5:70302190-70302342 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	21
Mature sequence(if miRNA)	133 - UCUAAAAUGAGUGGUGCUGAU - 153
Stem-loop(if miRNA)	--  U     UC   C   U                  AUCAUUGCAA     A  UA         -  CAAUACA   CA CACUA  UAU UUA AUCUAACGUCUCUAGUUG          UUUAC AA  ACACCUUCC AC       C   || |||||  ||| ||| ||||||||||||||||||          ||||| ||  ||||||||| ||   GU GUGGU  GUA AAU UAGAUUGCAGAGAUCAAC          AAAUG UU  UGUGGGAGG UG       C UA  C     GA   A   C                  AAACCAUAUA     A  CC         C  CACCACC
Stem-loop sequence	CAUCACUAUCUAUCUUAUAUCUAACGUCUCUAGUUGAUCAUUGCAAUUUACAAAUAACACCUUCCACCAAUACACCCCACCACGUCGGAGGGUGUCCUUAGUAAAAUAUACCAAACAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGCUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961826.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||||=||||||||||||| targets:1039   AUCAGCAUCACUCAUUUUAGA   1059 Target Full Sequence	1.0	Zea mays clone 238435 mRNA sequence	NA	coding protein	psRNATarget
JB166503.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||||==|||||||||||| targets:25   AUCAGCAUUACUCAUUUUAGA   45 Target Full Sequence	2.5	Sequence 4167 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238172.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||||==|||||||||||| targets:25   AUCAGCAUUACUCAUUUUAGA   45 Target Full Sequence	2.5	Sequence 4167 from Patent EP2985353	NA	coding protein	psRNATarget
HI406042.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||||==|||||||||||| targets:25   AUCAGCAUUACUCAUUUUAGA   45 Target Full Sequence	2.5	Sequence 4167 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001175061.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||=|=||||||||||||| targets:2001   AUCAGUAUCACUCAUUUUAGA   2021 Target Full Sequence	2.0	Zea mays Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (LOC100382312), mRNA	NA	coding protein	psRNATarget
BT063866.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||=|=||||||||||||| targets:2001   AUCAGUAUCACUCAUUUUAGA   2021 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0113N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656992.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||=|=||||||||||||| targets:2291   AUCAGUAUCACUCAUUUUAGA   2311 Target Full Sequence	2.0	PREDICTED: Zea mays Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (LOC100382312), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656990.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   |||||=|=||||||||||||| targets:2302   AUCAGUAUCACUCAUUUUAGA   2322 Target Full Sequence	2.0	PREDICTED: Zea mays Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (LOC100382312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403224.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163685.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403384.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
JB163845.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:7   AUCAUCACCACUCAUUUUAGA   27 Target Full Sequence	1.0	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
JB170004.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:11   AUCAUCACCACUCAUUUUAGA   31 Target Full Sequence	1.0	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:11   AUCAUCACCACUCAUUUUAGA   31 Target Full Sequence	1.0	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
HI409543.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:11   AUCAUCACCACUCAUUUUAGA   31 Target Full Sequence	1.0	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
BT087210.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:333   AUCAUCACCACUCAUUUUAGA   353 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:2953   AUCAUCACCACUCAUUUUAGA   2973 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||||||||||| targets:3131   AUCAUCACCACUCAUUUUAGA   3151 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*||||=||||||||||| targets:11   AUCAUCACCGCUCAUUUUAGA   31 Target Full Sequence	2.5	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
HI403282.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*||||=||||||||||| targets:11   AUCAUCACCGCUCAUUUUAGA   31 Target Full Sequence	2.5	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
JB163743.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*||||=||||||||||| targets:11   AUCAUCACCGCUCAUUUUAGA   31 Target Full Sequence	2.5	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||=|||||||| targets:59   AUCAUCACCACUUAUUUUAGA   79 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
HI402998.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||=|||||||| targets:59   AUCAUCACCACUUAUUUUAGA   79 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
JB163459.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||||*|||||||=|||||||| targets:59   AUCAUCACCACUUAUUUUAGA   79 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
BT037068.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:896   AUUAUCACCACUCAUUUUAGA   916 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:861   AUUAUCACCACUCAUUUUAGA   881 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:1041   AUUAUCACCACUCAUUUUAGA   1061 Target Full Sequence	2.0	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008681195.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:1931   AUUACCACCACUCAUUUUAGA   1951 Target Full Sequence	2.0	PREDICTED: Zea mays signal recognition particle 54 kDa protein, chloroplastic (LOC103654352), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:2009   AUUAUCACCACUCAUUUUAGA   2029 Target Full Sequence	2.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||=|*|||||||||||||||| targets:2018   AUUAUCACCACUCAUUUUAGA   2038 Target Full Sequence	2.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403383.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||*|*=||||||||||||||| targets:7   AUAAUUACCACUCAUUUUAGA   27 Target Full Sequence	3.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||*|*=||||||||||||||| targets:7   AUAAUUACCACUCAUUUUAGA   27 Target Full Sequence	3.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:21   UAGUCGUGGUGAGUAAAAUCU   1   ||*|*=||||||||||||||| targets:7   AUAAUUACCACUCAUUUUAGA   27 Target Full Sequence	3.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget