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BaseInfo

ncRNA ID	novel_zma_miR4362
Species	Zea mays
Class	miRNA
Genome position	Chr5:53222521-53222659 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	116 - AGACGUUAGAUCUAAGAUGAGUGG - 139
Stem-loop(if miRNA)	--AUC   A                  A   ---------------AUCA    AAUUUGUAAAUAACACCUUUCAC      CAU UUAGAUCUAAUGUCUCUG UUG                   UUGC                       C      ||| |||||||||||||||||| |||                   ||||      GUA AAUCUAGAUUGCAGAGAU AAC                   AUGU                       A GGUGA   G                  C   AAACCAUAUAAAACGAUUC    GGGAGACUACACCACCCCACAUC
Stem-loop sequence	AUCCAUAUUAGAUCUAAUGUCUCUGAUUGAUCAUUGCAAUUUGUAAAUAACACCUUUCACCACUACACCCCACCACAUCAGAGGGUGUACUUAGCAAAAUAUACCAAACAACUAGAGACGUUAGAUCUAAGAUGAGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163685.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:903   CCACUCAUUUUAGAUCUAACGUCU   926 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:868   CCACUCAUUUUAGAUCUAACGUCU   891 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:340   CCACUCAUUUUAGAUCUAACGUCU   363 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:1048   CCACUCAUUUUAGAUCUAACGUCU   1071 Target Full Sequence	1.0	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:2016   CCACUCAUUUUAGAUCUAACGUCU   2039 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||||||| targets:2025   CCACUCAUUUUAGAUCUAACGUCU   2048 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   |||||=|||||||||||||||||| targets:678   CCACUUAUCUUAGAUCUAACGUCU   701 Target Full Sequence	1.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
JB163845.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
HI403384.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=||||||||||=|||| targets:14   CCACUCAUUUUAGAUCUAAUGUCU   37 Target Full Sequence	2.5	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
JB163743.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||=|||||=||||||||||||||| targets:18   CCGCUCAUUUUAGAUCUAACGUCU   41 Target Full Sequence	1.0	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||=|||||=||||||||||||||| targets:18   CCGCUCAUUUUAGAUCUAACGUCU   41 Target Full Sequence	1.0	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
HI403282.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||=|||||=||||||||||||||| targets:18   CCGCUCAUUUUAGAUCUAACGUCU   41 Target Full Sequence	1.0	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
HI409543.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
JB170004.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||||||=|||||||||||||=| targets:18   CCACUCAUUUUAGAUCUAACGUUU   41 Target Full Sequence	2.5	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
EU948462.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   *=|||=||=||||||||||||||| targets:437   AUACUUAUUUUAGAUCUAACGUCU   460 Target Full Sequence	2.0	Zea mays clone 377988 mRNA sequence	NA	coding protein	psRNATarget
XM_008654898.2	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   =|||||||=|||||||||||*||| targets:3   UCACUCAUUUUAGAUCUAACAUCU   26 Target Full Sequence	2.5	PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA	NA	coding protein	psRNATarget
HI403418.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   *|||||||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2074227	NA	coding protein	psRNATarget
JB163879.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   *|||||||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235548.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   *|||||||=|||*||||||||||| targets:25   GCACUCAUUUUAAAUCUAACGUCU   48 Target Full Sequence	2.5	Sequence 1543 from Patent EP2985353	NA	coding protein	psRNATarget
JB166495.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   |||||*||=|*||||||||||||| targets:43   CCACUGAUUUGAGAUCUAACGUCU   66 Target Full Sequence	3.0	Sequence 4159 from Patent EP2559767	NA	coding protein	psRNATarget
HI406034.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   |||||*||=|*||||||||||||| targets:43   CCACUGAUUUGAGAUCUAACGUCU   66 Target Full Sequence	3.0	Sequence 4159 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238164.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   |||||*||=|*||||||||||||| targets:43   CCACUGAUUUGAGAUCUAACGUCU   66 Target Full Sequence	3.0	Sequence 4159 from Patent EP2985353	NA	coding protein	psRNATarget
BT016456.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   =|||*|*||||||||||||||||| targets:43   UCACCCUUCUUAGAUCUAACGUCU   66 Target Full Sequence	1.0	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
EU955849.1	ncRNA:24   GGUGAGUAGAAUCUAGAUUGCAGA   1   ||||-||||||*|||||||||||* targets:1976   CCAC-CAUCUUUGAUCUAACGUCA   1998 Target Full Sequence	2.5	Zea mays clone 1548842 mRNA sequence	NA	coding protein	psRNATarget