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BaseInfo

ncRNA ID	novel_zma_miR4358
Species	Zea mays
Class	miRNA
Genome position	Chr5:34365296-34365373 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - ACAAAUAAAAAAGAACGGAUGGAG - 24
Stem-loop(if miRNA)	--            GAA     A   CCCGC       U   CCAUUCGUUCUU   UAUUU UCG     UAAUUUA U   ||||||||||||   ||||| |||     |||||||   GGUAGGCAAGAA   AUAAA AGC     AUUAAGU U GA            AAA     C   ACAUA       U
Stem-loop sequence	CCAUUCGUUCUUGAAUAUUUAUCGCCCGCUAAUUUAUUUUUGAAUUAAUACACGACAAAUAAAAAAGAACGGAUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT043369.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||||=||||||||||||||||| targets:667   CUCCAUUCGUUCUUUUUUAUUUGU   690 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172D08 mRNA, complete cds	NA	coding protein	psRNATarget
AY109253.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=|||||||||||||||||||| targets:791   CUCUAUCCGUUCUUUUUUAUUUGU   814 Target Full Sequence	0.0	Zea mays PCO072854 mRNA sequence	NA	coding protein	psRNATarget
BT041022.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||||=||||||||||||||||| targets:1096   CUCCAUUCGUUCUUUUUUAUUUGU   1119 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0167K10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148845.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||||=||||||||||||||||| targets:1089   CUCCAUUCGUUCUUUUUUAUUUGU   1112 Target Full Sequence	1.0	Zea mays putative carboxylesterase 2 (LOC100274486), mRNA	NA	coding protein	psRNATarget
BT043172.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||||=||||||||||||||||| targets:1089   CUCCAUUCGUUCUUUUUUAUUUGU   1112 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0118C01 mRNA, complete cds	NA	coding protein	psRNATarget
EZ108080.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:221   CUCCCUCCGUUCUUUUUUAUUUGU   244 Target Full Sequence	0.0	TSA: Zea mays contig43738, mRNA sequence	NA	coding protein	psRNATarget
BT042470.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:471   CUCCCUCCGUUCUUUUUUAUUUGU   494 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0284P22 mRNA, complete cds	NA	coding protein	psRNATarget
EU951653.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:593   CUCCCUCCGUUCUUUUUUAUUUGU   616 Target Full Sequence	0.0	Zea mays clone 987934 mRNA sequence	NA	coding protein	psRNATarget
BT018393.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:309   CUCCCUCCGUUCUUUUUUAUUUGU   332 Target Full Sequence	0.0	Zea mays clone EL01N0319H05.d mRNA sequence	NA	coding protein	psRNATarget
XM_008678982.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:1639   CUCCCUCCGUUCUUUUUUAUUUGU   1662 Target Full Sequence	0.0	PREDICTED: Zea mays DNA-binding protein (LOC100281586), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957192.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:1750   CUCCCUCCGUUCUUUUUUAUUUGU   1773 Target Full Sequence	0.0	Zea mays clone 1585404 DNA-binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154505.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:1750   CUCCCUCCGUUCUUUUUUAUUUGU   1773 Target Full Sequence	0.0	Zea mays DNA-binding protein (LOC100281586), mRNA	NA	coding protein	psRNATarget
NM_001154468.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:2034   CUCCCUCCGUUCUUUUUUAUUUGU   2057 Target Full Sequence	0.0	Zea mays serine palmitoyltransferase 1 (LOC100281549), mRNA	NA	coding protein	psRNATarget
EU957076.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:2035   CUCCCUCCGUUCUUUUUUAUUUGU   2058 Target Full Sequence	0.0	Zea mays clone 1582008 serine palmitoyltransferase 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660352.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:2064   CUCCCUCCGUUCUUUUUUAUUUGU   2087 Target Full Sequence	0.0	PREDICTED: Zea mays serine palmitoyltransferase 1 (LOC100281549), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654115.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:752   CUCCCUCCGUUCUUUUUUAUUUGU   775 Target Full Sequence	0.0	PREDICTED: Zea mays phosphatidylinositol/phosphatidylcholine transfer protein SFH11 (LOC103632297), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667413.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||||||||||||||||||| targets:1340   CUCCCUCCGUUCUUUUUUAUUUGU   1363 Target Full Sequence	0.0	PREDICTED: Zea mays polygalacturonase (LOC103644217), mRNA	NA	coding protein	psRNATarget
BT060773.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||||||||||||||||||| targets:1007   CUCUCUCCGUUCUUUUUUAUUUGU   1030 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0047M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT018797.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =|||*||||||||||||||||||| targets:712   UUCCCUCCGUUCUUUUUUAUUUGU   735 Target Full Sequence	0.0	Zea mays clone EL01N0528E05.d mRNA sequence	NA	coding protein	psRNATarget
BT084872.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||||||=||||||||||||||*| targets:1816   CUCCAUCUGUUCUUUUUUAUUUAU   1839 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0198J07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674427.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||||||=||||||||||||||*| targets:1854   CUCCAUCUGUUCUUUUUUAUUUAU   1877 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100278472), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674421.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||=|*||||||||||||||||||| targets:1313   CUUCCUCCGUUCUUUUUUAUUUGU   1336 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (pco128770), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ106623.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   **|=|||||||||||||||||||| targets:87   ACCUAUCCGUUCUUUUUUAUUUGU   110 Target Full Sequence	0.0	TSA: Zea mays contig42281, mRNA sequence	NA	coding protein	psRNATarget
HI406931.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:5   AUCCCUCCGUUCUUUUUUAUUUGU   28 Target Full Sequence	0.0	Sequence 5056 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239061.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:5   AUCCCUCCGUUCUUUUUUAUUUGU   28 Target Full Sequence	0.0	Sequence 5056 from Patent EP2985353	NA	coding protein	psRNATarget
JB167392.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:5   AUCCCUCCGUUCUUUUUUAUUUGU   28 Target Full Sequence	0.0	Sequence 5056 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001326549.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:762   AUCCCUCCGUUCUUUUUUAUUUGU   785 Target Full Sequence	0.0	Zea mays Acyl-acyl carrier protein thioesterase ATL3 chloroplastic (LOC100502341), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU976954.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:771   AUCCCUCCGUUCUUUUUUAUUUGU   794 Target Full Sequence	0.0	Zea mays clone 994728 mRNA sequence	NA	coding protein	psRNATarget
BT087866.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:901   AUCCCUCCGUUCUUUUUUAUUUGU   924 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0271N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196819.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|||*||||||||||||||||||| targets:901   AUCCCUCCGUUCUUUUUUAUUUGU   924 Target Full Sequence	0.0	Zea mays Acyl-acyl carrier protein thioesterase ATL3 chloroplastic (LOC100502341), mRNA	NA	coding protein	psRNATarget
XM_020552916.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|*||||||||||||||||||||| targets:1118   AUGCAUCCGUUCUUUUUUAUUUGU   1141 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103654873 (LOC103654873), mRNA	NA	coding protein	psRNATarget
DQ244935.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==||||||||||||||*|||| targets:710   CUCUGUCCGUUCUUUUUUAAUUGU   733 Target Full Sequence	1.5	Zea mays clone 11849 mRNA sequence	NA	coding protein	psRNATarget
EU954843.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==||||||||||||||*|||| targets:700   CUCUGUCCGUUCUUUUUUAAUUGU   723 Target Full Sequence	1.5	Zea mays clone 1487143 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT070136.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==||||||||||||||*|||| targets:701   CUCUGUCCGUUCUUUUUUAAUUGU   724 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0130M19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652552.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:775   CUCUCUCUGUUCUUUUUUAUUUGU   798 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939171 (LOC109939171), mRNA	NA	coding protein	psRNATarget
EU965559.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==||||||||||||||*|||| targets:739   CUCUGUCCGUUCUUUUUUAAUUGU   762 Target Full Sequence	1.5	Zea mays clone 286947 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150592.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==||||||||||||||*|||| targets:739   CUCUGUCCGUUCUUUUUUAAUUGU   762 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276891 (LOC100276891), mRNA	NA	coding protein	psRNATarget
NM_001352159.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:931   CUCUCUCUGUUCUUUUUUAUUUGU   954 Target Full Sequence	1.0	Zea mays uncharacterized LOC103631680 (LOC103631680), mRNA	NA	coding protein	psRNATarget
EU976651.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:824   CUCUCUCUGUUCUUUUUUAUUUGU   847 Target Full Sequence	1.0	Zea mays clone 986191 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952488.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:931   CUCUCUCUGUUCUUUUUUAUUUGU   954 Target Full Sequence	1.0	Zea mays clone 1282018 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT040343.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:927   CUCUCUCUGUUCUUUUUUAUUUGU   950 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0084G19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545007.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:948   CUCUCUCUGUUCUUUUUUAUUUGU   971 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631680 (LOC103631680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042340.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:1028   CUCUCUCUGUUCUUUUUUAUUUGU   1051 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0205I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545011.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:1023   CUCUCUCUGUUCUUUUUUAUUUGU   1046 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631680 (LOC103631680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545008.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:1030   CUCUCUCUGUUCUUUUUUAUUUGU   1053 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631680 (LOC103631680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU954394.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*||=|||=|||||||||||| targets:1156   CUCCCUCUGUUUUUUUUUAUUUGU   1179 Target Full Sequence	2.5	Zea mays clone 1465260 dihydrodipicolinate reductase mRNA, complete cds	NA	coding protein	psRNATarget
BT042082.1	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1403   GUCCUGUCCGUUCUUUUUUAUUUGU   1427 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0126P02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649401.2	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1539   GUCCUGUCCGUUCUUUUUUAUUUGU   1563 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (umc2515), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY739299.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||==*||||||||||||||||||| targets:1531   CUUUCUCCGUUCUUUUUUAUUUGU   1554 Target Full Sequence	0.0	Zea mays adenosine 5'-phosphosulfate reductase 4 (APRL4) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112332.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||==*||||||||||||||||||| targets:1531   CUUUCUCCGUUCUUUUUUAUUUGU   1554 Target Full Sequence	0.0	Zea mays adenosine 5'-phosphosulfate reductase-like 4 (aprl4), mRNA	NA	coding protein	psRNATarget
BT087900.1	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1569   GUCCUGUCCGUUCUUUUUUAUUUGU   1593 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0298H02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538866.1	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1564   GUCCUGUCCGUUCUUUUUUAUUUGU   1588 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (umc2515), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649400.2	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1607   GUCCUGUCCGUUCUUUUUUAUUUGU   1631 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (umc2515), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU954603.1	ncRNA:24   GAGG-UAGGCAAGAAAAAAUAAACA   1   *|||-=||||||||||||||||||| targets:1565   GUCCUGUCCGUUCUUUUUUAUUUGU   1589 Target Full Sequence	0.0	Zea mays clone 1472869 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137457.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:2151   CUCUCUCUGUUCUUUUUUAUUUGU   2174 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100192034), mRNA	NA	coding protein	psRNATarget
BT034313.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:2151   CUCUCUCUGUUCUUUUUUAUUUGU   2174 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551665.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||=|||||||||||||||| targets:2863   CUCUCUCUGUUCUUUUUUAUUUGU   2886 Target Full Sequence	1.0	PREDICTED: Zea mays Nuclear speckle RNA-binding protein A (LOC100382777), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY107869.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||||||||||||||||||* targets:619   CUCUCUCCGUUCUUUUUUAUUUGC   642 Target Full Sequence	1.0	Zea mays PCO087009 mRNA sequence	NA	coding protein	psRNATarget
EU964262.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||||||||||||||||||* targets:1046   CUCUCUCCGUUCUUUUUUAUUUGC   1069 Target Full Sequence	1.0	Zea mays clone 277365 protein OS-9 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156217.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||||||||||||||||||* targets:1046   CUCUCUCCGUUCUUUUUUAUUUGC   1069 Target Full Sequence	1.0	Zea mays uncharacterized LOC100283315 (pco087009), mRNA	NA	coding protein	psRNATarget
LQ239036.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||*||| targets:10   CUCCCUCCGUUCUUUUUUAUGUGU   33 Target Full Sequence	1.5	Sequence 5031 from Patent EP2985353	NA	coding protein	psRNATarget
JB167367.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||*||| targets:10   CUCCCUCCGUUCUUUUUUAUGUGU   33 Target Full Sequence	1.5	Sequence 5031 from Patent EP2559767	NA	coding protein	psRNATarget
HI406906.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||*||| targets:10   CUCCCUCCGUUCUUUUUUAUGUGU   33 Target Full Sequence	1.5	Sequence 5031 from Patent EP2074227	NA	coding protein	psRNATarget
EZ062003.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||||||||*||||||||||||*| targets:80   CUCCAUCCGCUCUUUUUUAUUUCU   103 Target Full Sequence	2.5	TSA: Zea mays contig63125, mRNA sequence	NA	coding protein	psRNATarget
EZ111619.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:152   CUCACUCCGUUCUUUUUUAUUUGU   175 Target Full Sequence	0.0	TSA: Zea mays contig47280, mRNA sequence	NA	coding protein	psRNATarget
NM_001112782.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:654   CUCACUCCGUUCUUUUUUAUUUGU   677 Target Full Sequence	0.0	Zea mays ZCN16 protein (ZCN16), mRNA	NA	coding protein	psRNATarget
EU241931.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:654   CUCACUCCGUUCUUUUUUAUUUGU   677 Target Full Sequence	0.0	Zea mays ZCN16 (ZCN16) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679910.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||||*| targets:910   CUCCCUCCGUUCUUUUUUAUUUCU   933 Target Full Sequence	1.5	PREDICTED: Zea mays oligosaccharyltransferase complex subunit ostc (LOC103652917), mRNA	NA	coding protein	psRNATarget
BT087358.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:1043   CUCACUCCGUUCUUUUUUAUUUGU   1066 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0053I03 mRNA, complete cds	NA	coding protein	psRNATarget
EU966638.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||||*| targets:1035   CUCCCUCCGUUCUUUUUUAUUUUU   1058 Target Full Sequence	1.5	Zea mays clone 295814 dihydrodipicolinate reductase mRNA, complete cds	NA	coding protein	psRNATarget
BT039655.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||||*| targets:1040   CUCCCUCCGUUCUUUUUUAUUUUU   1063 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0037G01 mRNA, complete cds	NA	coding protein	psRNATarget
EU959117.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:1069   CUCACUCCGUUCUUUUUUAUUUGU   1092 Target Full Sequence	0.0	Zea mays clone 210465 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149884.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**||||||||||||||||||| targets:1069   CUCACUCCGUUCUUUUUUAUUUGU   1092 Target Full Sequence	0.0	Zea mays uncharacterized LOC100275979 (LOC100275979), mRNA	NA	coding protein	psRNATarget
NM_001147332.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||||*| targets:1101   CUCCCUCCGUUCUUUUUUAUUUUU   1124 Target Full Sequence	1.5	Zea mays 4-hydroxy-tetrahydrodipicolinate reductase 2 chloroplastic (LOC100272879), mRNA	NA	coding protein	psRNATarget
BT054505.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||*||||||||||||||| targets:1231   CUCCUUCCAUUCUUUUUUAUUUGU   1254 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0110M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT054505.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =**|=*=||||||||||||||||| targets:1278   UAACGCUCGUUCUUUUUUAUUUGU   1301 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0110M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT036747.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||*||||||||||||||| targets:1295   CUCCUUCCAUUCUUUUUUAUUUGU   1318 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0137E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT036747.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =**|=*=||||||||||||||||| targets:1342   UAACGCUCGUUCUUUUUUAUUUGU   1365 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0137E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT062062.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||||*| targets:961   CUCCCUCCGUUCUUUUUUAUUUCU   984 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0211C19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087672.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||*||||||||||||||| targets:1384   CUCCUUCCAUUCUUUUUUAUUUGU   1407 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds	NA	coding protein	psRNATarget
BT087672.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =**|=*=||||||||||||||||| targets:1431   UAACGCUCGUUCUUUUUUAUUUGU   1454 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147580.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||*||||||||||||||| targets:1414   CUCCUUCCAUUCUUUUUUAUUUGU   1437 Target Full Sequence	1.0	Zea mays Protein SAWADEE HOMEODOMAIN HOMOLOG 2 (pco140607), mRNA	NA	coding protein	psRNATarget
NM_001147580.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =**|=*=||||||||||||||||| targets:1461   UAACGCUCGUUCUUUUUUAUUUGU   1484 Target Full Sequence	2.0	Zea mays Protein SAWADEE HOMEODOMAIN HOMOLOG 2 (pco140607), mRNA	NA	coding protein	psRNATarget
BT040281.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||*||||||||||||||| targets:1414   CUCCUUCCAUUCUUUUUUAUUUGU   1437 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds	NA	coding protein	psRNATarget
BT040281.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =**|=*=||||||||||||||||| targets:1461   UAACGCUCGUUCUUUUUUAUUUGU   1484 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds	NA	coding protein	psRNATarget
BT063280.1	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1525   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1551 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047E08 mRNA, complete cds	NA	coding protein	psRNATarget
EU955808.1	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1552   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1578 Target Full Sequence	2.5	Zea mays clone 1547106 loricrin mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154089.1	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1552   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1578 Target Full Sequence	2.5	Zea mays loricrin (LOC100281170), mRNA	NA	coding protein	psRNATarget
XM_008656685.2	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1544   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1570 Target Full Sequence	2.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656684.2	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1547   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1573 Target Full Sequence	2.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656682.2	ncRNA:24   GAG-GUAGG--CAAGAAAAAAUAAACA   1   |||-|=|||--|||||||||||||||| targets:1550   CUCUCGUCCUCGUUCUUUUUUAUUUGU   1576 Target Full Sequence	2.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950150.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||||||*||| targets:675   CUCCCUCCGUUCUUUUUUAUGUGU   698 Target Full Sequence	1.5	Zea mays clone 465573 mRNA sequence	NA	coding protein	psRNATarget
BT018848.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||==|=|*||||||||||||||| targets:2107   CUCUGUUCUUUCUUUUUUAUUUGU   2130 Target Full Sequence	2.0	Zea mays clone EL01N0555E10.d mRNA sequence	NA	coding protein	psRNATarget
XM_020553489.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:3218   CUCCUUCCGUUCUUUUCUAUUUGU   3241 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020553488.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:3625   CUCCUUCCGUUCUUUUCUAUUUGU   3648 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020553487.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:3814   CUCCUUCCGUUCUUUUCUAUUUGU   3837 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020553485.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:3850   CUCCUUCCGUUCUUUUCUAUUUGU   3873 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020553483.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:3933   CUCCUUCCGUUCUUUUCUAUUUGU   3956 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553484.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:4058   CUCCUUCCGUUCUUUUCUAUUUGU   4081 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553486.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:4215   CUCCUUCCGUUCUUUUCUAUUUGU   4238 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020553482.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:4311   CUCCUUCCGUUCUUUUCUAUUUGU   4334 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553481.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|||||||||||*||||||| targets:4324   CUCCUUCCGUUCUUUUCUAUUUGU   4347 Target Full Sequence	1.5	PREDICTED: Zea mays putative DUF593 domain containing family protein (LOC100382517), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956913.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   *|=*=||||||||||||||||||| targets:1222   GUUGGUCCGUUCUUUUUUAUUUGU   1245 Target Full Sequence	0.0	Zea mays clone 1577371 mRNA sequence	NA	coding protein	psRNATarget
XM_020540291.1	ncRNA:24   GAGGU-AGGCAAGAAAAAAUAAACA   1   =*|=|-||||||||||||||||||| targets:3099   UACUACUCCGUUCUUUUUUAUUUGU   3123 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (pco092239), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ110245.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||*=*||||||||||||||||||| targets:80   CUGUCUCCGUUCUUUUUUAUUUGU   103 Target Full Sequence	0.0	TSA: Zea mays contig45905, mRNA sequence	NA	coding protein	psRNATarget
BT086772.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =|||*|||||||||||||||||*| targets:310   UUCCCUCCGUUCUUUUUUAUUUAU   333 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314K18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ111110.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||||||||||*| targets:300   CUCUCUCCGUUCUUUUUUAUUUUU   323 Target Full Sequence	1.5	TSA: Zea mays contig46771, mRNA sequence	NA	coding protein	psRNATarget
EU946974.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||**|=||||||||||||||||| targets:834   CUCACUUCGUUCUUUUUUAUUUGU   857 Target Full Sequence	1.0	Zea mays clone 325620 mRNA sequence	NA	coding protein	psRNATarget
BT086002.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   =|||*|||||||||||||||||*| targets:101   UUCCCUCCGUUCUUUUUUAUUUAU   124 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0097C15 mRNA, complete cds	NA	coding protein	psRNATarget
BT036130.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||=|*|||||||||||||||||*| targets:843   CUUCCUCCGUUCUUUUUUAUUUAU   866 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0097H02 mRNA, complete cds	NA	coding protein	psRNATarget
BT087307.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||*||||||||| targets:864   CUCUCUCCGUUCUUAUUUAUUUGU   887 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0033L24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682447.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||=|*|||||||||||||||||*| targets:884   CUUCCUCCGUUCUUUUUUAUUUAU   907 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100192695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034750.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||=|*|||||||||||||||||*| targets:953   CUUCCUCCGUUCUUUUUUAUUUAU   976 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0015G01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137898.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||=|*|||||||||||||||||*| targets:953   CUUCCUCCGUUCUUUUUUAUUUAU   976 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100192695), mRNA	NA	coding protein	psRNATarget
BT063879.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||*||||||||| targets:1220   CUCUCUCCGUUCUUAUUUAUUUGU   1243 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0115K10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156343.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||*||||||||| targets:1589   CUCUCUCCGUUCUUAUUUAUUUGU   1612 Target Full Sequence	1.5	Zea mays glucan endo-1,3-beta-glucosidase A6 (LOC100283442), mRNA	NA	coding protein	psRNATarget
EU964772.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||*||||||||| targets:1589   CUCUCUCCGUUCUUAUUUAUUUGU   1612 Target Full Sequence	1.5	Zea mays clone 281471 glucan endo-1,3-beta-glucosidase A6 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT018774.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*|||||||||*||||||||| targets:1583   CUCUCUCCGUUCUUAUUUAUUUGU   1606 Target Full Sequence	1.5	Zea mays clone EL01N0525H03.d mRNA sequence	NA	coding protein	psRNATarget
NM_001152522.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|=|*||||||||||||||| targets:1903   CUCCCUUCAUUCUUUUUUAUUUGU   1926 Target Full Sequence	2.0	Zea mays THO complex subunit 4 (LOC100279524), mRNA	NA	coding protein	psRNATarget
BT054393.1	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   ||||*|=|*||||||||||||||| targets:1903   CUCCCUUCAUUCUUUUUUAUUUGU   1926 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0027G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148271.2	ncRNA:24   GAGGUAGGCAAGAAAAAAUAAACA   1   |||=*||||||*|||||||||||| targets:574   CUCUCUCCGUUAUUUUUUAUUUGU   597 Target Full Sequence	1.5	Zea mays Short-chain dehydrogenase/reductase SDRA (LOC100273876), mRNA	NA	coding protein	psRNATarget