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BaseInfo

ncRNA ID novel_zma_miR4357
Species Zea mays
Class miRNA
Genome position Chr5:42257543-42257636 [-]
Reference genome RefGen_v4
Source SRR2287161;SRR2287164;SRR2287165;SRR4237227
Length 22
Mature sequence(if miRNA) 1 - GAAGCGCACAGAUGAAGUCGGG - 22
Stem-loop(if miRNA) --         A                    G  G  G       U
  CGGCUUCAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G
  ||||||||| |||||||||||||||||||| || || |||||||
  GCUGAAGUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A
GG         G                    A  G  G       U
Stem-loop sequence CGGCUUCAUAUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUCGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:22   GGGCUGAAGUAGACACGCGAAG   1
  ||||=|||=|||||||||||||
targets:3266   CCCGGCUUUAUCUGUGCGCUUC   3287

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:22   GGGCUGAAGUAGACACGCGAAG   1
  ||||=|||=|||||||||||||
targets:3404   CCCGGCUUUAUCUGUGCGCUUC   3425

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget