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BaseInfo

ncRNA ID	novel_zma_miR4356
Species	Zea mays
Class	miRNA
Genome position	Chr5:35155606-35155736 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - AGGUCUGUUUGGUUCGUGGCUAAC - 24
Stem-loop(if miRNA)	--  -  C           -  G      A            -------------            CG   G   AG GU UGUUUGGUUCG UG CUAACU UGUCACAUUUUA             UCUAAGGUUAGU  UUC A   || || ||||||||||| || |||||| ||||||||||||             ||||||||||||  ||| A   UC CG ACAAACCAAGC AC GAUUGA ACGGUGUGAAAU             AGAUUUCAAUCA  AAG U AA  A  U           G  G      -            GGAUUGAAAACAC            AG   U
Stem-loop sequence	AGGUCUGUUUGGUUCGUGGCUAACUAUGUCACAUUUUAUCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACUUUAGACACAAAAGUUAGGUAAAGUGUGGCAAGUUAGGCAGCGAACCAAACAUGCACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163745.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	0.0	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	0.0	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	0.0	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||| targets:1067   GUUAGCCACGAACCAAACAGGCCU   1090 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||=|||||||||| targets:3683   GUUAGCCACGAACUAAACAGACCU   3706 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||* targets:710   GUUAGCCACGAACCAAACAGACCC   733 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||* targets:693   GUUAGCCACGAACCAAACAGACCC   716 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||||||||* targets:728   GUUAGCCACGAACCAAACAGACCC   751 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   |||||||||||||||||=|||||* targets:2493   GUUAGCCACGAACCAAAUAGACCC   2516 Target Full Sequence	2.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||* targets:817   GUUAGCCACGAACCAAACAGGCCC   840 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||||||||||||||||||=||* targets:2490   GUUAGCCACGAACCAAACAGGCCC   2513 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *||||||||*||||||||||=||| targets:942   UUUAGCCACAAACCAAACAGGCCU   965 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *||||||||*||||||||||=||| targets:1426   UUUAGCCACAAACCAAACAGGCCU   1449 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:139   UUUAGCCACGAACCAAACAGCCCC   162 Target Full Sequence	2.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:84   UUUAGCCACGAACCAAACAGCCCC   107 Target Full Sequence	2.5	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   *|||||||||||||||||||*||* targets:2762   UUUAGCCACGAACCAAACAGCCCC   2785 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   CAAUCGGUGCUUGGUUUGUCUGGA   1   ||||*|||||||||||||||*||* targets:422   GUUAACCACGAACCAAACAGUCCC   445 Target Full Sequence	2.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget