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BaseInfo

ncRNA ID	novel_zma_miR4354
Species	Zea mays
Class	miRNA
Genome position	Chr5:99056973-99057034 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	39 - GGGAUUGAAGGGGAUUGAGAUGGA - 62
Stem-loop(if miRNA)	--                 -   U      GG   GGGAUUGAAGGGGAUUG AGA GGAAAU  A   ||||||||||||||||| ||| ||||||   CCCUAACUUCCCCUAAC UCU CCUUUA  C AG                 C   -      AU
Stem-loop sequence	GGGAUUGAAGGGGAUUGAGAUGGAAAUGGACUAAUUUCCUCUCCAAUCCCCUUCAAUCCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT038305.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   ||||||||||||||=||||||||| targets:611   UCCAUCUCAAUCCCUUUCAAUCCC   634 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   ||||||||||||||=||||||||| targets:1616   UCCAUCUCAAUCCCUUUCAAUCCC   1639 Target Full Sequence	1.5	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   ||||*||||||||=|||||||||| targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:1415   UCCGUAUCAAUCCCCUUCAAUCCA   1438 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:1459   UCCGUAUCAAUCCCCUUCAAUCCA   1482 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:1477   UCCGUAUCAAUCCCCUUCAAUCCA   1500 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*|||||||||||||||||* targets:970   UCCGUAUCAAUCCCCUUCAAUCCA   993 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
EU950098.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||||||||||*|||||||||| targets:774   UACAUCUCAAUCCACUUCAAUCCC   797 Target Full Sequence	1.5	Zea mays clone 461257 mRNA sequence	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   AGGUAGAG-UUAGGGGAAGUUAGGG   1   |||-||||-|||||||||||||||| targets:58   UCC-UCUCCAAUCCCCUUCAAUCCC   81 Target Full Sequence	2.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||=|*||=||||||||||||||* targets:1692   UCCGUAUCGAUCCCCUUCAAUCCA   1715 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||*|||*||||||||||=||||| targets:194   UCCCUCUGAAUCCCCUUCGAUCCC   217 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
EU942361.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||=|||||||*|||||||||| targets:506   UACAUUUCAAUCCACUUCAAUCCC   529 Target Full Sequence	2.5	Zea mays clone 1487121 mRNA sequence	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||||=|||||*|||||||||| targets:711   UACAUCUUAAUCCACUUCAAUCCC   734 Target Full Sequence	2.5	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
LQ238258.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2985353	NA	coding protein	psRNATarget
HI406128.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2074227	NA	coding protein	psRNATarget
JB166589.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*|||||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||--||||||||||||||||||* targets:86   UCC--CUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	1.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||--||||||||||||||||||* targets:86   UCC--CUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	1.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||--||||||||||||||||||* targets:86   UCC--CUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	1.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |=||*|||||||||||*||||||= targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |=||*|||||||||||*||||||= targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |||**||=|||||||||||||||= targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   ||=*||||||||||||*||||||= targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*||*||||||||*|||||||||| targets:5050   UACACCUCAAUCCACUUCAAUCCC   5073 Target Full Sequence	1.5	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   *|||*||||||||||*|||||||* targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   *|||*||||||||||*|||||||* targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   *|||*||||||||||*|||||||* targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AG-GUAGAGUUAGGGGAAGUUAGGG   1   ||-||-|||||||||||*||||||| targets:70   UCUCA-CUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AG-GUAGAGUUAGGGGAAGUUAGGG   1   ||-||-|||||||||||*||||||| targets:70   UCUCA-CUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AG-GUAGAGUUAGGGGAAGUUAGGG   1   ||-||-|||||||||||*||||||| targets:70   UCUCA-CUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545649.1	ncRNA:24   AGGUAG-AGUUAGGGGAAGUUAGGG   1   |=||*|-|||*|||||||||||||| targets:714   UUCACCCUCAUUCCCCUUCAAUCCC   738 Target Full Sequence	3.0	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*||*=|||||||*|||||||||| targets:732   UACACUUCAAUCCACUUCAAUCCC   755 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   AGGUAGAGUUAGGGGAAGUUAGGG   1   |*||*=|||||||*|||||||||| targets:1080   UACACUUCAAUCCACUUCAAUCCC   1103 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget