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BaseInfo

ncRNA ID novel_zma_miR4342
Species Zea mays
Class miRNA
Genome position Chr10:94903327-94903382 [+]
Reference genome RefGen_v4
Source SRR2287161
Length 21
Mature sequence(if miRNA) 36 - GAUUAAUUAAUUCUCGUCGGC - 56
Stem-loop(if miRNA) --              GUAG    C AG
  CGACGGGAAUUAAU    CCGA G  G
  ||||||||||||||    |||| |
  GCUGCUCUUAAUUA    GGUU C  A
CG              AUUA    U GU
Stem-loop sequence CGACGGGAAUUAAUGUAGCCGACGAGGAUGCUUUGGAUUAAUUAAUUCUCGUCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001149770.2
ncRNA:21   CGGCUGCUCUUAAUUAAUUAG   1
  *=|||||*|*|||||||||||
targets:1496   AUCGACGUGCAUUAAUUAAUC   1516

2.5 Zea mays HXXXD-type acyl-transferase family protein (LOC100275767), mRNA NA coding protein psRNATarget
EU957979.1
ncRNA:21   CGGCUGCUCUUAAUUAAUUAG   1
  *=|||||*|*|||||||||||
targets:1497   AUCGACGUGCAUUAAUUAAUC   1517

2.5 Zea mays clone 1638895 hypothetical protein mRNA, complete cds NA coding protein psRNATarget