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BaseInfo

ncRNA ID novel_zma_miR4341
Species Zea mays
Class miRNA
Genome position Chr5:207836837-207836902 [+]
Reference genome RefGen_v4
Source SRR2287161;SRR2647387
Length 24
Mature sequence(if miRNA) 1 - AUUGAUAUGGAUUGGAGGAGAUUU - 24
Stem-loop(if miRNA) --   G          GA  A           A
  AUU AUAUGGAUUG  GG GAUUUUGAUUU C
  ||| ||||||||||  || ||||||||||| U
  UAA UAUACCUAAC  UC CUAAAAUUAGG A
GU   G          UC  -           U
Stem-loop sequence AUUGAUAUGGAUUGGAGGAGAUUUUGAUUUACUAUGGAUUAAAAUCCUCUCAAUCCAUAUGAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008666525.2
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||||||||||
targets:898   AAAUCACCUCCAAUCCAUAUCAAU   921

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||||||||||
targets:826   AAAUCACCUCCAAUCCAUAUCAAU   849

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||||||||||
targets:825   AAAUCACCUCCAAUCCAUAUCAAU   848

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT062922.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||||||||||
targets:879   AAAUCACCUCCAAUCCAUAUCAAU   902

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:282   AAAUCCCCUCCAAUCCGUAUCAAU   305

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1478   AAAUCCCCUCCAAUCCGUAUCAAU   1501

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1478   AAAUCCCCUCCAAUCCGUAUCAAU   1501

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1464   AAAUCCCCUCCAAUCCGUAUCAAU   1487

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1446   AAAUCCCCUCCAAUCCGUAUCAAU   1469

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1402   AAAUCCCCUCCAAUCCGUAUCAAU   1425

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1066   AAAUCCCCUCCAAUCCGUAUCAAU   1089

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:1028   AAAUCCCCUCCAAUCCGUAUCAAU   1051

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  ||||||||*|||||||=|||||||
targets:989   AAAUCUCCCCCAAUCCGUAUCAAU   1012

2.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
EU959055.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |*|||*||||||||||||||||||
targets:827   AWAUCACCUCCAAUCCAUAUCAAU   850

1.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU972046.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||*||||||||||=|||||||
targets:765   AAAUCCCCUCCAAUCCGUAUCAAU   788

2.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||||||=*=||||||||||||||
targets:426   AAAUCUCUCUCAAUCCAUAUCAAU   449

3.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
BT034418.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:939   AAA-CUCUGCCAAUCCAUAUCAAU   961

2.0 Zea mays full-length cDNA clone ZM_BFc0170E06 mRNA, complete cds NA coding protein psRNATarget
NM_001137530.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:939   AAA-CUCUGCCAAUCCAUAUCAAU   961

2.0 Zea mays DUF1692 domain, endoplasmic reticulum vescicle transporter protein (LOC100192107), mRNA NA coding protein psRNATarget
EU959606.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:446   AAA-CUCUGCCAAUCCAUAUCAAU   468

2.0 Zea mays clone 218844 serologically defined breast cancer antigen NY-BR-84 mRNA, complete cds NA coding protein psRNATarget
XM_008656057.2
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:446   AAA-CUCUGCCAAUCCAUAUCAAU   468

2.0 PREDICTED: Zea mays DUF1692 domain, endoplasmic reticulum vescicle transporter protein (LOC100192107), transcript variant X1, mRNA NA coding protein psRNATarget
BT018471.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:294   AAA-CUCUGCCAAUCCAUAUCAAU   316

2.0 Zea mays clone EL01N0422D05.d mRNA sequence NA coding protein psRNATarget
EU953645.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:308   AAA-CUCUGCCAAUCCAUAUCAAU   330

2.0 Zea mays clone 1442203 serologically defined breast cancer antigen NY-BR-84 mRNA, complete cds NA coding protein psRNATarget
BT043124.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:287   AAA-CUCUGCCAAUCCAUAUCAAU   309

2.0 Zea mays full-length cDNA clone ZM_BFc0101C15 mRNA, complete cds NA coding protein psRNATarget
AY105967.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:391   AAA-CUCUGCCAAUCCAUAUCAAU   413

2.0 Zea mays PCO133275 mRNA sequence NA coding protein psRNATarget
BT019027.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:115   AAA-CUCUGCCAAUCCAUAUCAAU   137

2.0 Zea mays clone Contig532.F mRNA sequence NA coding protein psRNATarget
EZ060045.1
ncRNA:24   UUUAGAGGAGGUUAGGUAUAGUUA   1
  |||-|||=*|||||||||||||||
targets:121   AAA-CUCUGCCAAUCCAUAUCAAU   143

2.0 TSA: Zea mays contig61167, mRNA sequence NA coding protein psRNATarget
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