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BaseInfo

ncRNA ID novel_zma_miR4320
Species Zea mays
Class miRNA
Genome position Chr7:103646424-103646500 [-]
Reference genome RefGen_v4
Source SRR1583941;SRR2647388;SRR2647390
Length 24
Mature sequence(if miRNA) 1 - UUCUCUGAGGUUUCUACACAUAGU - 24
Stem-loop(if miRNA) --               A            -     - U
  UAUGUGUAGAAACCU AGAGAACUACAU UGAAA C C
  ||||||||||||||| |||||||||||| ||||| | U
  AUACACAUCUUUGGA UCUCUUGAUGUG ACUUU G A
UG               G            U     A U
Stem-loop sequence UAUGUGUAGAAACCUAAGAGAACUACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUGAGGUUUCUACACAUAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235378.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:11   ACUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1373 from Patent EP2985353 NA coding protein psRNATarget
JB163709.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:11   ACUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1373 from Patent EP2559767 NA coding protein psRNATarget
HI403248.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:11   ACUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1373 from Patent EP2074227 NA coding protein psRNATarget
HI403209.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:88   ACUAUGUGUAGAAACCUAAGAGAA   111

1.5 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
LQ235339.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:88   ACUAUGUGUAGAAACCUAAGAGAA   111

1.5 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
JB163670.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*||||||
targets:88   ACUAUGUGUAGAAACCUAAGAGAA   111

1.5 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
LQ235324.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1319 from Patent EP2985353 NA coding protein psRNATarget
LQ235368.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1363 from Patent EP2985353 NA coding protein psRNATarget
LQ235375.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1370 from Patent EP2985353 NA coding protein psRNATarget
LQ235323.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1318 from Patent EP2985353 NA coding protein psRNATarget
HI403210.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1335 from Patent EP2074227 NA coding protein psRNATarget
HI403193.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1318 from Patent EP2074227 NA coding protein psRNATarget
JB163654.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1318 from Patent EP2559767 NA coding protein psRNATarget
HI403238.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1363 from Patent EP2074227 NA coding protein psRNATarget
HI403194.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1319 from Patent EP2074227 NA coding protein psRNATarget
HI403245.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1370 from Patent EP2074227 NA coding protein psRNATarget
LQ235366.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1361 from Patent EP2985353 NA coding protein psRNATarget
LQ235340.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1335 from Patent EP2985353 NA coding protein psRNATarget
JB163668.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1332 from Patent EP2559767 NA coding protein psRNATarget
JB163699.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1363 from Patent EP2559767 NA coding protein psRNATarget
LQ235379.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1374 from Patent EP2985353 NA coding protein psRNATarget
JB163697.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1361 from Patent EP2559767 NA coding protein psRNATarget
HI403236.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1361 from Patent EP2074227 NA coding protein psRNATarget
HI403249.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1374 from Patent EP2074227 NA coding protein psRNATarget
JB163655.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1319 from Patent EP2559767 NA coding protein psRNATarget
JB163710.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1374 from Patent EP2559767 NA coding protein psRNATarget
JB163671.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1335 from Patent EP2559767 NA coding protein psRNATarget
LQ235337.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1332 from Patent EP2985353 NA coding protein psRNATarget
JB163706.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1370 from Patent EP2559767 NA coding protein psRNATarget
HI403207.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=|||||||||||||||*||||||
targets:11   AUUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1332 from Patent EP2074227 NA coding protein psRNATarget
LQ235352.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*|||||*
targets:82   ACUAUGUGUAGAAACCUAAGAGAU   105

2.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163683.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*|||||*
targets:82   ACUAUGUGUAGAAACCUAAGAGAU   105

2.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
HI403222.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |||||||||||||||||*|||||*
targets:82   ACUAUGUGUAGAAACCUAAGAGAU   105

2.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
JB163714.1
ncRNA:24   UG--AUACACAUCUUUGGAGUCUCUU   1
  ||--|||||||||||||||*||||||
targets:9   ACAGUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1378 from Patent EP2559767 NA coding protein psRNATarget
LQ235383.1
ncRNA:24   UG--AUACACAUCUUUGGAGUCUCUU   1
  ||--|||||||||||||||*||||||
targets:9   ACAGUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1378 from Patent EP2985353 NA coding protein psRNATarget
HI403253.1
ncRNA:24   UG--AUACACAUCUUUGGAGUCUCUU   1
  ||--|||||||||||||||*||||||
targets:9   ACAGUAUGUGUAGAAACCUAAGAGAA   34

1.5 Sequence 1378 from Patent EP2074227 NA coding protein psRNATarget
HI403169.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  ||||||||*||||||||*||||||
targets:9   ACUAUGUGCAGAAACCUAAGAGAA   32

2.5 Sequence 1294 from Patent EP2074227 NA coding protein psRNATarget
JB163630.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  ||||||||*||||||||*||||||
targets:9   ACUAUGUGCAGAAACCUAAGAGAA   32

2.5 Sequence 1294 from Patent EP2559767 NA coding protein psRNATarget
LQ235299.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  ||||||||*||||||||*||||||
targets:9   ACUAUGUGCAGAAACCUAAGAGAA   32

2.5 Sequence 1294 from Patent EP2985353 NA coding protein psRNATarget
JB163422.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=||||||||*||||||*||||||
targets:12   AUUAUGUGUAUAAACCUAAGAGAA   35

2.5 Sequence 1086 from Patent EP2559767 NA coding protein psRNATarget
HI402961.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=||||||||*||||||*||||||
targets:12   AUUAUGUGUAUAAACCUAAGAGAA   35

2.5 Sequence 1086 from Patent EP2074227 NA coding protein psRNATarget
LQ235091.1
ncRNA:24   UGAUACACAUCUUUGGAGUCUCUU   1
  |=||||||||*||||||*||||||
targets:12   AUUAUGUGUAUAAACCUAAGAGAA   35

2.5 Sequence 1086 from Patent EP2985353 NA coding protein psRNATarget
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