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BaseInfo

ncRNA ID	novel_zma_miR4319
Species	Zea mays
Class	miRNA
Genome position	Chr4:154631689-154631812 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	101 - CACUAAGGGCUGAUUUGGUGACAA - 124
Stem-loop(if miRNA)	-CA  A                 AA          - GA             AAA   ACUAA    CU AGGGCUGAUUUGGUGAC  GGGGAUCACG G  GGAUUGGAGGGGG   UGA     U    || |||||||||||||||||  |||||||||| |  |||||||||||||   |||     U    GA UCCCGGCUAAACCACUG  UCCCUAGUGU C  CCUAACCUCCCCC   ACU     C AGG  A                 -G          A UC             --A   CCCCC
Stem-loop sequence	CACUAAGGGCUGAUUUGGUGACAAGGGGAUCACGGGAGGAUUGGAGGGGGAAAUGAACUAAUUCCCCCCUCAACCCCCUCCAAUCCCUCAUGUGAUCCCUGGUCACCAAAUCGGCCCUAAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238416.1	ncRNA:24   AAC---AGUGGUUUAGUCGGGAAUCAC   1   |||---|=||||||*|||||||||||| targets:111   UUGGGGUUACCAAACCAGCCCUUAGUG   137 Target Full Sequence	1.5	Sequence 4411 from Patent EP2985353	NA	coding protein	psRNATarget
JB166747.1	ncRNA:24   AAC---AGUGGUUUAGUCGGGAAUCAC   1   |||---|=||||||*|||||||||||| targets:111   UUGGGGUUACCAAACCAGCCCUUAGUG   137 Target Full Sequence	1.5	Sequence 4411 from Patent EP2559767	NA	coding protein	psRNATarget
HI406286.1	ncRNA:24   AAC---AGUGGUUUAGUCGGGAAUCAC   1   |||---|=||||||*|||||||||||| targets:111   UUGGGGUUACCAAACCAGCCCUUAGUG   137 Target Full Sequence	1.5	Sequence 4411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:24   AAC-AGUGGUUUAGUCGGGAAUCAC   1   *||-|||||||||||||*||||||| targets:117   CUGAUCACCAAAUCAGCACUUAGUG   141 Target Full Sequence	1.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   AAC-AGUGGUUUAGUCGGGAAUCAC   1   *||-|||||||||||||*||||||| targets:117   CUGAUCACCAAAUCAGCACUUAGUG   141 Target Full Sequence	1.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   AAC-AGUGGUUUAGUCGGGAAUCAC   1   *||-|||||||||||||*||||||| targets:117   CUGAUCACCAAAUCAGCACUUAGUG   141 Target Full Sequence	1.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654858.2	ncRNA:24   AAC---AGUGGUUUAGUCGGGAAUCAC   1   |||---|=||||||*|||||||||||| targets:1895   UUGGGGUUACCAAACCAGCCCUUAGUG   1921 Target Full Sequence	1.5	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC103633173), mRNA	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:24   AACAGUGGUUUAGUCGGGAAUCAC   1   |**|||||||||||||=||||||* targets:40   UAAUCACCAAAUCAGCUCUUAGUA   63 Target Full Sequence	2.5	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   AACAGUGGUUUAGUCGGGAAUCAC   1   |***|||||||||||||||*|||| targets:1344   UAACCACCAAAUCAGCCCUAAGUG   1367 Target Full Sequence	1.5	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   AACAGUGGUUUAGUCGGGAAUCAC   1   |***|||||||||||||||*|||| targets:1344   UAACCACCAAAUCAGCCCUAAGUG   1367 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget