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BaseInfo

ncRNA ID novel_zma_miR4314
Species Zea mays
Class miRNA
Genome position Chr2:157346274-157346344 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - ACUCGACAAAUAAGCUCUUUGCCG - 24
Stem-loop(if miRNA) --     A    U   C              CAAA
  ACUCG CAAA AAG UCUUUGCCGAGUGU    A
  ||||| |||| ||| ||||||||||||||    A
  UGAGC GUUU UUU AGAAACGGCUUACA    U
UG     C    C   A              AAAA
Stem-loop sequence ACUCGACAAAUAAGCUCUUUGCCGAGUGUCAAAAAUAAAAACAUUCGGCAAAGAAUUUCUUUGCCGAGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU951420.1
ncRNA:24   GCCGUUUCU-CGAAUAAACAGCUCA   1
  |||||||||-|||||||||||||||
targets:164   CGGCAAAGAAGCUUAUUUGUCGAGU   188

2.0 Zea mays clone 701735 mRNA sequence NA coding protein psRNATarget
BT060736.1
ncRNA:24   GCCGUUUCUCGAAUAAACAGCUCA   1
  ||*||||||*||||||||*|||||
targets:1120   CGACAAAGAACUUAUUUGCCGAGU   1143

2.5 Zea mays full-length cDNA clone ZM_BFb0040O21 mRNA, complete cds NA coding protein psRNATarget