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BaseInfo

ncRNA ID	novel_zma_miR4309
Species	Zea mays
Class	miRNA
Genome position	Chr4:155961386-155961448 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287161
Length	21
Mature sequence(if miRNA)	1 - AAAAGAAACGGAAGGAGUACC - 21
Stem-loop(if miRNA)	--                    A   G  GCU   UACUCCUUCUGUUUCUUUUU GUU UC   G   |||||||||||||||||||| ||| ||   AUGAGGAAGGCAAAGAAAAA CAA GG   A CC                    G   -  AUA
Stem-loop sequence	UACUCCUUCUGUUUCUUUUUAGUUGUCGCUGAAUAGGAACGAAAAAGAAACGGAAGGAGUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054612.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||||||||||||||| targets:1362   AGUACUCCUUCCGUUUCUUUU   1382 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0190P19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352327.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *||||||||||=||||||||| targets:2667   AGUACUCCUUCUGUUUCUUUU   2687 Target Full Sequence	1.5	Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   ||||||||*|||||||||||| targets:46   GGUACUCCCUCCGUUUCUUUU   66 Target Full Sequence	1.5	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   ||||||||*|||||||||||| targets:2055   GGUACUCCCUCCGUUUCUUUU   2075 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
EU957244.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||||||||||=|||* targets:960   UGUACUCCUUCCGUUUUUUUA   980 Target Full Sequence	2.5	Zea mays clone 1586825 calcium-dependent protein kinase substrate protein mRNA, complete cds	NA	coding protein	psRNATarget
JB169171.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6835 from Patent EP2559767	NA	coding protein	psRNATarget
HI409961.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
JB170657.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8321 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
HI410196.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8321 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240840.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6835 from Patent EP2985353	NA	coding protein	psRNATarget
JB170422.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242326.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 8321 from Patent EP2985353	NA	coding protein	psRNATarget
HI408945.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
HI408710.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   UGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6835 from Patent EP2074227	NA	coding protein	psRNATarget
JB169406.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:2   AGUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:4   UGUACUCCCUCCGUUUCUUUU   24 Target Full Sequence	1.5	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
JB167731.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:4   UGUACUCCCUCCGUUUCUUUU   24 Target Full Sequence	1.5	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
HI407270.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:4   UGUACUCCCUCCGUUUCUUUU   24 Target Full Sequence	1.5	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   CGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
JB163817.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   CGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
JB163740.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   AGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   AGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403279.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   AGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
HI403356.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:9   CGUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
EU964901.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:495   AGUACUCCCUCCGUUUCUUUU   515 Target Full Sequence	1.5	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
EU973473.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:647   UGUACUCCCUCCGUUUCUUUU   667 Target Full Sequence	1.5	Zea mays clone 399411 mRNA sequence	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:567   AGUACUCCCUCCGUUUCUUUU   587 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
EU974849.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:567   AGUACUCCCUCCGUUUCUUUU   587 Target Full Sequence	1.5	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT037092.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:1082   AGUACUCCAUCCGUUUCUUUU   1102 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:1082   AGUACUCCAUCCGUUUCUUUU   1102 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
BT024153.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:188   CGUACUCCCUCCGUUUCUUUU   208 Target Full Sequence	1.5	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:162   AGUACUCCCUCCGUUUCUUUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:3139   AGUACUCCAUCCGUUUCUUUU   3159 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   *|||||||*|||||||||||| targets:3148   AGUACUCCAUCCGUUUCUUUU   3168 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152046.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||==||||||||||||| targets:826   AUUACUUUUUCCGUUUCUUUU   846 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278927 (LOC100278927), mRNA	NA	coding protein	psRNATarget
EU976025.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||==||||||||||||| targets:826   AUUACUUUUUCCGUUUCUUUU   846 Target Full Sequence	2.0	Zea mays clone 508899 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ065373.1	ncRNA:21   CCAUGAGGAAGGCAAAG-AAAA   1   **|||||||||||||||-|||| targets:276   CAUACUCCUUCCGUUUCGUUUU   297 Target Full Sequence	3.0	TSA: Zea mays contig01006, mRNA sequence	NA	coding protein	psRNATarget
HI409699.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:2   GUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7824 from Patent EP2074227	NA	coding protein	psRNATarget
JB170160.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:2   GUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7824 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241829.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:2   GUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7824 from Patent EP2985353	NA	coding protein	psRNATarget
HI403287.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:9   GAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
JB163748.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:9   GAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:9   GAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
BT067066.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:417   GUUACUCCCUCCGUUUCUUUU   437 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0180L06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||||||*|||||||||||| targets:1541   GAUACUCCCUCCGUUUCUUUU   1561 Target Full Sequence	1.5	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
HI409615.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7740 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241745.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7740 from Patent EP2985353	NA	coding protein	psRNATarget
JB170076.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7740 from Patent EP2559767	NA	coding protein	psRNATarget
JB169079.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   AUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6743 from Patent EP2559767	NA	coding protein	psRNATarget
HI409328.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   CAUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7453 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241746.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7741 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240700.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6695 from Patent EP2985353	NA	coding protein	psRNATarget
JB170077.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7741 from Patent EP2559767	NA	coding protein	psRNATarget
HI409616.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7741 from Patent EP2074227	NA	coding protein	psRNATarget
JB169031.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6695 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240748.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   AUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6743 from Patent EP2985353	NA	coding protein	psRNATarget
HI408570.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   ACUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6695 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241458.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   CAUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7453 from Patent EP2985353	NA	coding protein	psRNATarget
HI408618.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   AUUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 6743 from Patent EP2074227	NA	coding protein	psRNATarget
JB169789.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2   CAUACUCCCUCCGUUUCUUUU   22 Target Full Sequence	1.5	Sequence 7453 from Patent EP2559767	NA	coding protein	psRNATarget
HI403294.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   ACUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
JB163755.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   ACUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235424.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   ACUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
JB163860.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   CAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235499.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   UAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1494 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   CAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
HI403399.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   CAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
HI403401.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   AUUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1526 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235531.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   AUUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1526 from Patent EP2985353	NA	coding protein	psRNATarget
JB163862.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   AUUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1526 from Patent EP2559767	NA	coding protein	psRNATarget
HI403369.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   UAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1494 from Patent EP2074227	NA	coding protein	psRNATarget
JB163830.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:9   UAUACUCCCUCCGUUUCUUUU   29 Target Full Sequence	1.5	Sequence 1494 from Patent EP2559767	NA	coding protein	psRNATarget
BT060817.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:228   AAUACUCCCUCCGUUUCUUUU   248 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ061772.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:182   UAUACUCCCUCCGUUUCUUUU   202 Target Full Sequence	1.5	TSA: Zea mays contig62894, mRNA sequence	NA	coding protein	psRNATarget
BT062074.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1135   ACUACUCCCUCCGUUUCUUUU   1155 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
EU953599.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1223   ACUACUCCCUCCGUUUCUUUU   1243 Target Full Sequence	1.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541158.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1026   CUUACUCCCUCCGUUUCUUUU   1046 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541157.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1028   CUUACUCCCUCCGUUUCUUUU   1048 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655254.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1047   CUUACUCCCUCCGUUUCUUUU   1067 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1218   ACUACUCCCUCCGUUUCUUUU   1238 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1233   ACUACUCCCUCCGUUUCUUUU   1253 Target Full Sequence	1.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1164   AUUACUCCCUCCGUUUCUUUU   1184 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1286   AAUACUCCCUCCGUUUCUUUU   1306 Target Full Sequence	1.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1286   AAUACUCCCUCCGUUUCUUUU   1306 Target Full Sequence	1.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1247   ACUACUCCCUCCGUUUCUUUU   1267 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:139   AAUACUCCCUCCGUUUCUUUU   159 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1299   ACUACUCCCUCCGUUUCUUUU   1319 Target Full Sequence	1.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1301   ACUACUCCCUCCGUUUCUUUU   1321 Target Full Sequence	1.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1270   AUUACUCCCUCCGUUUCUUUU   1290 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1407   ACUACUCCCUCCGUUUCUUUU   1427 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1525   ACUACUCCCUCCGUUUCUUUU   1545 Target Full Sequence	1.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1598   UAUACUCCCUCCGUUUCUUUU   1618 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1975   ACUACUCCCUCCGUUUCUUUU   1995 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1996   ACUACUCCCUCCGUUUCUUUU   2016 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2027   ACUACUCCCUCCGUUUCUUUU   2047 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2042   ACUACUCCCUCCGUUUCUUUU   2062 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2109   ACUACUCCCUCCGUUUCUUUU   2129 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2140   ACUACUCCCUCCGUUUCUUUU   2160 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546173.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1461   UAUACUCCCUCCGUUUCUUUU   1481 Target Full Sequence	1.5	PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:1450   AUUACUCCCUCCGUUUCUUUU   1470 Target Full Sequence	1.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2794   AUUACUCCCUCCGUUUCUUUU   2814 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2811   AUUACUCCCUCCGUUUCUUUU   2831 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2917   AUUACUCCCUCCGUUUCUUUU   2937 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669143.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2739   UAUACUCCAUCCGUUUCUUUU   2759 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008669142.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2669   UAUACUCCAUCCGUUUCUUUU   2689 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008669138.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2801   UAUACUCCAUCCGUUUCUUUU   2821 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2203   UAUACUCCCUCCGUUUCUUUU   2223 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:3696   AUUACUCCCUCCGUUUCUUUU   3716 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2203   UAUACUCCCUCCGUUUCUUUU   2223 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2203   UAUACUCCCUCCGUUUCUUUU   2223 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2224   UAUACUCCCUCCGUUUCUUUU   2244 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2224   UAUACUCCCUCCGUUUCUUUU   2244 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2224   UAUACUCCCUCCGUUUCUUUU   2244 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2203   UAUACUCCCUCCGUUUCUUUU   2223 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2141   UAUACUCCCUCCGUUUCUUUU   2161 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2162   UAUACUCCCUCCGUUUCUUUU   2182 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2217   UAUACUCCCUCCGUUUCUUUU   2237 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2242   UAUACUCCCUCCGUUUCUUUU   2262 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547479.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:3179   UAUACUCCAUCCGUUUCUUUU   3199 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547478.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:3179   UAUACUCCAUCCGUUUCUUUU   3199 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   **||||||*|||||||||||| targets:2203   UAUACUCCCUCCGUUUCUUUU   2223 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
LQ237988.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||=|||||||*|||||||| targets:6   GUUAUUCCUUCCAUUUCUUUU   26 Target Full Sequence	2.5	Sequence 3983 from Patent EP2985353	NA	coding protein	psRNATarget
JB166319.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||=|||||||*|||||||| targets:6   GUUAUUCCUUCCAUUUCUUUU   26 Target Full Sequence	2.5	Sequence 3983 from Patent EP2559767	NA	coding protein	psRNATarget
HI405858.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||=|||||||*|||||||| targets:6   GUUAUUCCUUCCAUUUCUUUU   26 Target Full Sequence	2.5	Sequence 3983 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:21   CCAUGAGGAAGGCAAAGAAAA   1   |*||=|||||||*|||||||| targets:2218   GUUAUUCCUUCCAUUUCUUUU   2238 Target Full Sequence	2.5	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget