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BaseInfo

ncRNA ID	novel_zma_miR4304
Species	Zea mays
Class	miRNA
Genome position	Chr2:144276760-144276983 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUGUGUGUGUCUAUAUAUAUAUAU - 24
Stem-loop(if miRNA)	-AUGUG   G                              -                                                                      U       UGU UCUAUAUAUAUAUAUAUAUAUAUAUAUAUA UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A       ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       GCA GGAUAUAUAUAUAUAUAUAUAUAUAUAUAU AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U AAUGGA   G                              U                                                                      A
Stem-loop sequence	AUGUGUGUGUCUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUUAUAUAUAUAUAUAUAUAUAUAUAUAUAGGGACGAGGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543485.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   |||||||||||||*|||||||||| targets:2499   AUAUAUAUAUAUAUACACACACAU   2522 Target Full Sequence	1.5	PREDICTED: Zea mays L-Aspartase-like family protein (IDP310), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU950968.1	ncRNA:24   UAUA--UAUAUAUAUCUGUGUGUGUA   1   ||||--|||||||||||||||=|||| targets:947   AUAUUUAUAUAUAUAGACACAUACAU   972 Target Full Sequence	1.5	Zea mays clone 677123 mRNA sequence	NA	coding protein	psRNATarget
XM_020544888.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   **||||||||||=||||||||||* targets:2240   CAAUAUAUAUAUGGACACACACAC   2263 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193697 (pco120282(609)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544890.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   **||||||||||=||||||||||* targets:1869   CAAUAUAUAUAUGGACACACACAC   1892 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193697 (pco120282(609)), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008663208.2	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   **||||||||||=||||||||||* targets:1784   CAAUAUAUAUAUGGACACACACAC   1807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193697 (pco120282(609)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544889.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   **||||||||||=||||||||||* targets:1784   CAAUAUAUAUAUGGACACACACAC   1807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193697 (pco120282(609)), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008666356.2	ncRNA:24   UAUA----UAUAUAUAUCUGUGUGUGUA   1   ||||----|||||||||*|||||||||| targets:431   AUAUGGCUAUAUAUAUACACACACACAU   458 Target Full Sequence	1.5	PREDICTED: Zea mays probable rhamnogalacturonate lyase B (LOC103643208), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967083.1	ncRNA:24   UAUA-UAUAUAUAUCUGUGUGUGUA   1   ||||-|||||||||*|||||||||* targets:1184   AUAUUAUAUAUAUAUACACACACAC   1208 Target Full Sequence	2.5	Zea mays clone 299388 xyloglucan endotransglucosylase/hydrolase protein 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156995.1	ncRNA:24   UAUA-UAUAUAUAUCUGUGUGUGUA   1   ||||-|||||||||*|||||||||* targets:1184   AUAUUAUAUAUAUAUACACACACAC   1208 Target Full Sequence	2.5	Zea mays xyloglucan endotransglucosylase/hydrolase protein 1 (LOC100284097), mRNA	NA	coding protein	psRNATarget
EU967353.1	ncRNA:24   UAUA-UAUAUAUAUCUGUGUGUGUA   1   ||||-|||||||||*|||||||||* targets:1082   AUAUUAUAUAUAUAUACACACACAC   1106 Target Full Sequence	2.5	Zea mays clone 301835 xyloglucan endotransglucosylase/hydrolase protein 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153039.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   =*||*|||=||||||||||||||| targets:1459   GAAUUUAUGUAUAGACACACACAU   1482 Target Full Sequence	1.0	Zea mays Bifunctional nuclease 1 (LOC100280101), mRNA	NA	coding protein	psRNATarget
BT055576.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   =*||*|||=||||||||||||||| targets:1459   GAAUUUAUGUAUAGACACACACAU   1482 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0041E11 mRNA, complete cds	NA	coding protein	psRNATarget
BT087802.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   =*||*|||=||||||||||||||| targets:1355   GAAUUUAUGUAUAGACACACACAU   1378 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0207J03 mRNA, complete cds	NA	coding protein	psRNATarget
EU970353.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   =*||*|||=||||||||||||||| targets:1373   GAAUUUAUGUAUAGACACACACAU   1396 Target Full Sequence	1.0	Zea mays clone 343656 mRNA sequence	NA	coding protein	psRNATarget
XM_008656532.2	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   ||*||||*|||||||||||||||* targets:762   AUUUAUAGAUAUAGACACACACAA   785 Target Full Sequence	2.0	PREDICTED: Zea mays Protein indeterminate-domain 9 (LOC100278452), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956926.1	ncRNA:24   UAUAUAUAUAUAUCUGUGUGUGUA   1   ||*||||*|||||||||||||||* targets:656   AUUUAUAGAUAUAGACACACACAA   679 Target Full Sequence	2.0	Zea mays clone 1577561 mRNA sequence	NA	coding protein	psRNATarget