ncRNA ID | novel_zma_miR4299 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr4:205103259-205103368 [+] |
Reference genome | RefGen_v4 |
Source | SRR2287160;SRR2287161 |
Length | 24 |
Mature sequence(if miRNA) | 87 - GUAGUAAGUUAGGCAGCGAACCAA - 110 |
Stem-loop(if miRNA) |
--       -GA      G   C         -------------     A     CG    A   GGUUUGU   CUAACU UGC ACAUUUUGU             UUAAG UUAGU  UUUC A   |||||||   |||||| ||| |||||||||             ||||| |||||  ||||   CCAAGCG   GAUUGA AUG UGUGAAACG             AAUUC AAUCA  AAAG U AA       ACG      -   A         AAUUGAAAACAUA     C     -A    U |
Stem-loop sequence | GGUUUGUGACUAACUGUGCCACAUUUUGUUUAAGAUUAGUCGUUUCAAUUGAAAAACUAACCUUAAAUACAAAAGUUAAGCAAAGUGUAGUAAGUUAGGCAGCGAACCAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT038009.1 |
|
1.5 | Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
XM_008656231.2 |
|
1.5 | PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA | NA | coding protein | psRNATarget |