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BaseInfo

ncRNA ID novel_zma_miR4299
Species Zea mays
Class miRNA
Genome position Chr4:205103259-205103368 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161
Length 24
Mature sequence(if miRNA) 87 - GUAGUAAGUUAGGCAGCGAACCAA - 110
Stem-loop(if miRNA) --       -GA      G   C         -------------     A     CG    A
  GGUUUGU   CUAACU UGC ACAUUUUGU             UUAAG UUAGU  UUUC A
  |||||||   |||||| ||| |||||||||             ||||| |||||  ||||
  CCAAGCG   GAUUGA AUG UGUGAAACG             AAUUC AAUCA  AAAG U
AA       ACG      -   A         AAUUGAAAACAUA     C     -A    U
Stem-loop sequence GGUUUGUGACUAACUGUGCCACAUUUUGUUUAAGAUUAGUCGUUUCAAUUGAAAAACUAACCUUAAAUACAAAAGUUAAGCAAAGUGUAGUAAGUUAGGCAGCGAACCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038009.1
ncRNA:24   AACCAAGCGACGGAUUGAAUGAUG   1
  |||||||||||||||||||||*||
targets:270   UUGGUUCGCUGCCUAACUUACCAC   293

1.5 Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds NA coding protein psRNATarget
XM_008656231.2
ncRNA:24   AACCAAGCGACGGAUUGAAUGAUG   1
  |||||||||||||||||||||*||
targets:5233   UUGGUUCGCUGCCUAACUUACCAC   5256

1.5 PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA NA coding protein psRNATarget