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BaseInfo

ncRNA ID novel_zma_miR4296
Species Zea mays
Class miRNA
Genome position Chr3:187850467-187850631 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287162;SRR2089702;SRR2089703;SRR2089705
Length 21
Mature sequence(if miRNA) 1 - CAAGCAAACCAUAUGAUCCAU - 21
Stem-loop(if miRNA) --        C   A    C        CG                C   U   ACACUUAAACCCUUCCACCACCAGCUCAA
  CAAGCAAA CAU UGAU CAUUAGAU  UGAUCCAACCGUAGGU ACA UUA                             U
  |||||||| ||| |||| ||||||||  |||||||||||||||| ||| |||
  GUUCGUUU GUA ACUA GUAAUCUA  ACUAGGUUGGUGUCUA UGU AGU                             A
AC        A   G    U        AU                -   U   ACCAAACAAUCCCCAAAAAAAUAUUUCUA
Stem-loop sequence CAAGCAAACCAUAUGAUCCAUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCCCUAACAAACCAUGAUUGUAUCUGUGGUUGGAUCAUAAUCUAAUGUAUCAGAUGAUUUGCUUGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235525.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:172   AUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
JB163856.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:172   AUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
HI403395.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:172   AUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
HI403099.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:178   AUGGAUCAGAUGGUUUGCUUG   198

1.5 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
LQ235229.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:178   AUGGAUCAGAUGGUUUGCUUG   198

1.5 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
JB163560.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:178   AUGGAUCAGAUGGUUUGCUUG   198

1.5 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
XM_008679933.2
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:1798   AUGGAUCAGAUGGUUUGCUUG   1818

1.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538741.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:973   AUGGAUCAGAUGGUUUGCUUG   993

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  ||||||||*||||||||||||
targets:973   AUGGAUCAGAUGGUUUGCUUG   993

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
HI403187.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  *|||||||*||||||||||||
targets:172   UUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
LQ235317.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  *|||||||*||||||||||||
targets:172   UUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
JB163648.1
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  *|||||||*||||||||||||
targets:172   UUGGAUCAGAUGGUUUGCUUG   192

1.5 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
BT035131.1
ncRNA:21   UACCUA-GUAUACCAAACGAAC   1
  |||*||-|||||||||||||||
targets:387   AUGCAUACAUAUGGUUUGCUUG   408

3.0 Zea mays full-length cDNA clone ZM_BFb0041E21 mRNA, complete cds NA coding protein psRNATarget
XM_008680394.2
ncRNA:21   UACCUAGUAUACCAAACGAAC   1
  |||*||||*||||||||||||
targets:266   AUGAAUCAGAUGGUUUGCUUG   286

2.5 PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA NA coding protein psRNATarget
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