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BaseInfo

ncRNA ID	novel_zma_miR4288
Species	Zea mays
Class	miRNA
Genome position	Chr3:12200295-12200401 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	23
Mature sequence(if miRNA)	85 - GGGCACUCGGCAAAGACGACUUU - 107
Stem-loop(if miRNA)	-----A  G               G                    AUUUU     A       GU CUUUGCCGAGUGCCC UGAUCUGGCACUCGGCAAAG     UUUUA U       || ||||||||||||||| ||||||||||||||||||||     |||||       CA GAAACGGCUCACGGG GCUAGACCGUGAGCCGUUUC     AAAAU U UUUCAG  -               G                    -GCAU     U
Stem-loop sequence	AGUGCUUUGCCGAGUGCCCGUGAUCUGGCACUCGGCAAAGAUUUUUUUUAAUUUUAAAAUACGCUUUGCCGAGUGCCAGAUCGGGGGCACUCGGCAAAGACGACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   ||||*|*|||||||||||||||| targets:10   AAAGCCUUCUUUGCCGAGUGCCC   32 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI407067.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=|*|||||||||||||||||=* targets:10   AGAUUCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=|*|||||||||||||||||=* targets:10   AGAUUCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
JB167528.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=|*|||||||||||||||||=* targets:10   AGAUUCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
JB169026.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   =|=||||*||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   =|=||||*||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   =|=||||*||||||||||||||* targets:44   GAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
EU943169.1	ncRNA:23   UUU--CAGCAGAAACGGCUCACGGG   1   =||--|*|||||||||||||||||= targets:739   GAAUCGCCGUCUUUGCCGAGUGCCU   763 Target Full Sequence	2.0	Zea mays clone 1575275 mRNA sequence	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=||*|*|||||||||||||||* targets:13   AGAGGCUUCUUUGCCGAGUGCCG   35 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=||*|*|||||||||||||||* targets:13   AGAGGCUUCUUUGCCGAGUGCCG   35 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=||*|*|||||||||||||||* targets:13   AGAGGCUUCUUUGCCGAGUGCCG   35 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:23   UUUCAGCAGAAACGGCUCACGGG   1   |=||*|*|||||||||||||||* targets:1096   AGAGGCUUCUUUGCCGAGUGCCA   1118 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget