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BaseInfo

ncRNA ID	novel_zma_miR4284
Species	Zea mays
Class	miRNA
Genome position	Chr3:63391956-63392171 [+]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287161
Length	21
Mature sequence(if miRNA)	196 - ACCGGUUCACCAUCGUCUGGC - 216
Stem-loop(if miRNA)	--                        C                               C         U   C    C               U  C  CUA     A   CAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||   GUCUGCUACCACUUGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C CG                        U                               A         C   C    A               C  C  CAC     A
Stem-loop sequence	CAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGUUCACCAUCGUCUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   |||||||||||||||=||||| targets:3205   GCCAGACGAUGGUGAGCCGGU   3225 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   |||||||||||||||=||||| targets:3343   GCCAGACGAUGGUGAGCCGGU   3363 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   ||==|*||||||||||||||| targets:1382   GCUGGUCGAUGGUGAACCGGU   1402 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget
BT054171.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   ||==|*||||||||||||||| targets:1382   GCUGGUCGAUGGUGAACCGGU   1402 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget